1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctcagaaaaagtaagaaatttaaagaggaaaaaagaaactcatgtttcatactaacttgtggtttcttctgttgtttacatgttttgctctttgcaatagATTCAATGTAACGAAGTCATACTGGAAGGCACAGATATAACAAAAGCAATAATCGACTTTGTTACTGCCTCCTCAATTGAGATTTTAGTTGTTGGTGCCC
species | Vitis vinifera |
transcript | Vv11s0065g00390.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ttcatactaacttgtggtttcttctgttgtttacatgttttgctctttgcaatagATTCAATGTAACGAAGTCATACTGGAAGGCACAGATATAACAAAAGCAATAATCGACTTTGTTACTGCCTCCTCAATTGAGATTTTAGTTGTTGGTGCCC
tactaac putative branch site (score: 0)
ttttgctcttt putative PPT
ttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcagaaaaagtaagaaatttaaagaggaaaaaagaaactcatgtttcatactaacttgtggtttcttctgttgtttacatgttttgctctttgcaatagATTCAATGTAACGAAGTCATACTGGAAGGCACAGATATAACAAAAGCAATAATCGACTTTGTTACTGCCTCCTCAATTGAGATTTTAGTTGTTGGTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -agaaaaa
- - - - - - aagaaat
- - - - - - - - - - - aagagga
- - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - ctcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtt