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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttatcgggcattataatccccaattattttattttcatggataatactaaactagttggtggttgctgataatgctaagctatttggcggttgctttgacagGTTGCAGGAGGAGATGGTACTGTCGGTTGGGTGCTAGGTAGTCTTGGAGAGCTTGACAAACAGAATCGTGAACCAGTTCCTCCTGTTGGAATTATTCCAC

Basic information

species Vitis vinifera
transcript Vv11s0052g01840.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G18730.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtttatcgggcattataatccccaattattttattttcatggataatactaaactagttggtggttgctgataatgctaagctatttg-gcggttgctttgacagGTTGCAGGAGGAGATGGTACTGTCGGTTGGGTGCTAGGTAGTCTTGGAGAGCTTGACAAACAGAATCGTGAACCAGTTCCTCCTGTTGGAATTATTCCAC
||  || ||| |  |||  |  || |||||         |  || |||         | | |||   |||  |   ||| |  |  | |    |   ||| || || ||||||||||||| ||||||||||| |||||||| || ||  |||||||||||||| | ||| |          | | |||||||||||||| ||||||| |
gtgagtgtattgaccatatttttctccaatc--------tctatagat---------ccacttgaatgtttttagcaat-cagaattgtgaatggaattggttggatagGTTGCAGGAGGTGATGGTACTGTTGGTTGGGTTCTTGGATGTCTTGGAGAGCTTAATAAAGATGGAAAGTCGCAAATTCCTCCTGTTGGAGTTATTCCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactagttggtggttgctgataatgctaagctatttggcggttgctttgacagGTTGCAGGAGGAGATGGTACTGTCGGTTGGGTGCTAGGTAGTCTTGGAGAGCTTGACAAACAGAATCGTGAACCAGTTCCTCCTGTTGGAATTATTCCAC
                                           ttgcttt  CT-rich tract
                   tgataat  TA-rich tract