1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtgctattattctaatctccaatactgcaatctggtttatgttttttgggtttttgtattgatttactcatctggggtatctctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAATCGGTGTTTCATACCCAAAGAACCAGCCCATGAGGATATACTCCAGTCTC
species | Vitis vinifera |
transcript | Vv11s0052g01180.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTAT CTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAATEST: gi|71859609|gb|DT008664.1|DT008664
genomic: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTATgtaagtgcta ... tctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAAT
EST: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTAT CTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAATEST: gi|71869843|gb|DT018898.1|DT018898
genomic: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTATgtaagtgcta ... tctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAAT
EST: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTAT CTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAATEST: gi|161716729|gb|FC065576.1|FC065576
genomic: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTATgtaagtgcta ... tctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAAT
EST: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTAT CTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAAT
genomic: ACTGCTGATTTCCATACCTATTCCATACTTTGGAATCCCCAGCGGATTATgtaagtgcta ... tctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAAT
ttatgttttttgggtttttgtattgatttactcatctggggtatctctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAATCGGTGTTTCATACCCAAAGAACCAGCCCATGAGGATATACTCCAGTCTC
tattgat putative branch site (score: 3)
tctctgtttc putative PPT
tttttgtattgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctattattctaatctccaatactgcaatctggtttatgttttttgggtttttgtattgatttactcatctggggtatctctgtttcagCTTCTCTGTGGATGGCACCCCCATCAGGGAGTTCAAGAACTCTGAGTCAATCGGTGTTTCATACCCAAAGAACCAGCCCATGAGGATATACTCCAGTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT