Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctttcctctgtttttgtggatgctagggttggctggtcttggaaactgtgtttctctaaggtttggttgtgtttttcagGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC

Basic information

species Vitis vinifera
transcript Vv11s0052g00890.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G147500_T04 (Zea mays), 3'ss of exon 2
----gtacgctttcctctgtttttgtggatgctagggttggctggtcttggaaactgtgtttctctaag-gtttggttgtgttttt-cagGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
    |  |   || | || ||    | ||      ||  |  || |  ||    | ||| ||  |   | |  || |||||      |   | | |||| |||||  | ||||  ||| ||||||| || |||  |||  |||||||||||||||| || |||||||||||||| || |||||       
gtgagcgccaatttccctcttgggttcgagttcgagggggtttgattctgatgtcagtggtttgcggcgtggctgcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGAC------

upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G147500_T06 (Zea mays), 3'ss of exon 2
----gtacgctttcctctgtttttgtggatgctagggttggctggtcttggaaactgtgtttctctaag-gtttggttgtgtt-tttcagGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
    |  |   || | || ||    | ||      ||  |  || |  ||    | ||| ||  |   | |  || |||||      |   | | |||| |||||  | ||||  ||| ||||||| || |||  |||  |||||||||||||||| || |||||||||||||| || ||||| ||    
gtgagcgccaatttccctcttgggttcgagttcgagggggtttgattctgatgtcagtggtttgcggcgtggctgcttgtgcagcagCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGACCTC---

upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G07040.2 (Glycine max), 3'ss of exon 2
-----------------gtacgctttcctctgtttttgtggatgctagggttggctggtcttgg-aaactgtgtttctctaaggtttggttgtgtttttcagGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
                  ||  |  |  ||   ||   |   | |     | ||    | |    |||  ||     | |  | ||   |||| | |||||| || | | | ||||| |||||||  || ||||||||||| || |||||| | |||||  ||||||| ||||| || |||||||| ||||||||||| |||
gttagtttatttagttaataaaccctattcctcttcaattcttccctttctcgggcattttaaccaaatcgtagggttttt-gcttctcttgtttgtttcagCGACTACACGTTCGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTC

upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G57410.3 (Arabidopsis thaliana), 3'ss of exon 2
gtacgctttcctctgtttttgtggatgctagggttggct---ggtcttggaaactgtgtttctctaaggtttggttgtgtttttc----agGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
      ||   | | || ||       ||||||||  ||        |  ||   ||  |  |   |  ||| ||| | ||  |     ||||| | | | || ||| ||| ||  ||||||||||||||| | ||||||||||| |||||| | || || || ||||| || |||||||||||||| || 
-----gttagttttcttcttaatccccctagggtttactttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT

upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G57410.2 (Arabidopsis thaliana), 3'ss of exon 2
gtacgctttcctctgtttttgtggatgctagggttggct---ggtcttggaaactgtgtttctctaaggtttggttgtgtttttc----agGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
           | | || ||       ||||||||  ||        |  ||   ||  |  |   |  ||| ||| | ||  |     ||||| | | | || ||| ||| ||  ||||||||||||||| | ||||||||||| |||||| | || || || ||||| || |||||||||||||| || 
---------gttttcttcttaatccccctagggtttactttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggttggctggtcttggaaactgtgtttctctaaggtttggttgtgtttttcagGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
                                             tgtttttc  CT-rich tract
                                             tgttttt  TA-rich tract