Sequence
atgc intronic sequence ATGC exonic sequencegtgatgtgaaaaatgatgatctccttccctgaaaacctcggggaaaattttttattattatttttcttctgaaaataataataataataaattatctcaaatttatattttcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g19060.1 (Oryza sativa), 3'ss of exon 2
gtgatgtgaaaaatgatgatctccttccctgaaaacctcggggaaaattttttattattatttttcttctgaaaataataataataataaattatctcaaatttatattt-tcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
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---------------atattactcgttattgctagttgtagttatatacggcccttatgttaaatcaataaaaccttttaaacctaactttgtatcttttcttcctattcattagGCACAGGTGGACAGGAAGGTATGAAGCCCATCTTTGGGATAACAGCTGCAGAAGAGAAGGTCAGACTCGCAAAGGCAGACAAG
upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G07010.1 (Glycine max), 3'ss of exon 2
gtgatgtgaaaaatgatgatctccttccctgaaaacctcggggaaaattttttattattatttttcttctgaaaataataataataataaattatctcaaatttatattttcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
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--------------------------gtatcttattcatgaccaccaccttttatcatcataata-taatattagtaattattttatttatctgattctgtttcttattttcagACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAG
upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G00950.1 (Glycine max), 3'ss of exon 2
--gtgatgtgaaaaatgatgatctccttccctgaaaacctcggggaaaattttttattattatttttct-----tctgaaaata-ataataataataaattatct----caaatttatattttcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
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gtatcttattaatcatcgccaccaccaccaccaccatcttttatcattataatatatatatatatatatatatatatatatatatatatatatatttatttatctggtcttgtttcttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG
upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G57390.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------gtgatgtgaaaaat--gatgatctccttccctgaaaacctcggggaaaattttttattattatttttcttctgaaaataataataataataaattatctcaaatttatattttcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
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gtgcgtataaccaaattattcgtttactttaaataattaattagacgatagtgtaacatataaactcatgtgtaaatgc---atgagtttataatttgtgaaaac-----ctataattgatttttttttattaatataa-cagACATAGATGGACTGGAAGATACGAAGCTCATCTATGGGATAATAGTTGCCGAAGAGAAGGCCAAAGCAGAAAAGGAAGACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttttcttctgaaaataataataataataaattatctcaaatttatattttcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
tattttc CT-rich tract
aaaataataataataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatgtgaaaaatgatgatctccttccctgaaaacctcggggaaaattttttattattatttttcttctgaaaataataataataataaattatctcaaatttatattttcagACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA