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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagggtttatttttatttatttttaatttttaagcttcttgtgttctattgaagtgcgtagctagctgggtattgagatttttttttttgaatttttagGTGCGTAAAAATGGCGATTGTTCATGATATTGCAGAAG

Basic information

species Vitis vinifera
transcript Vv11s0037g01060.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G37010.1 (Glycine max), 3'ss of exon 2
--------------gttagggtttatttttatttatttttaatttttaag-----cttcttgtgtt----ctattga-agtgcgtagctagctgggtattgagatttttttttttgaatttttagGTGCGTAAAAATGGCGATTGTTCATGATATTGCAGAAG
               ||  |  | |  | ||| ||| ||| |||  | |      ||| |||   |    || || | | |  |  |  || | ||| ||  ||   || ||||| | |||| |||||| | |||||||| ||||||||||| ||||||||||
gttaatccaccttccttttgaatcagctgtatatatgttttattaatgactatttctttttgcaatgcacctgttaacattaggatgggaggtaggttttctgaaacttgttttttatttttcagGTGCATTAAAATGGCTATTGTTCATGACATTGCAGAAG

upper sequence: Vv11s0037g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G23820.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagggtttatttttatttatttttaatttttaagcttcttgtgttctattgaagtgcgtagctagctgggtattgagatttttttttttgaatttttagGTGCGTAAAAATGGCGATTGTTCATGATATTGCAGAAG
  || | ||  |  ||  || | | |   ||| ||| |||   ||  || |  ||      | ||       |||  | | |||| ||| |       ||| ||| | |||||||||||||||||||||||||||||||
-gtaagtttcttgcttgcttctctct---tttcaagtttcaactg--ctgtgaaaa-----aactcttcttatatacatacttttctttcta------tagATGCATGAAAATGGCGATTGTTCATGATATTGCAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctattgaagtgcgtagctagctgggtattgagatttttttttttgaatttttagGTGCGTAAAAATGGCGATTGTTCATGATATTGCAGAAG
                                  tttttttttttg  CT-rich tract
                          tattgagatttttttt  TA-rich tract