Sequence
atgc intronic sequence ATGC exonic sequencegtaccaaaaattccataattcaatatttatttaaattacatgacacaatgctagttgatgatccacatattaccagacaaaatagtgtatcatgcccttgtataaaacataggtctaattgatgaattaacagtccacttaaacccctctacttcttttcgatcttttcttctctatgtttgcagTAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACACAAATACAAGCTCCGATCTCAAAAACTCCGGTGATCGACGAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G08090.1 (Glycine max), 3'ss of exon 4
gtaccaaaaattccataattcaatatttatttaaattacatgacacaatgctagttgatg-atccacatattaccagacaaaatagtgtatcatgcccttgtataaaacataggtctaattgatgaattaacagtccacttaaacccctctacttcttttcgatcttttcttctctatgtttgcagTAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACACAAATACAAGCTCCGATCTCAAAAACTCCGGTGATCGACGAACAG
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------gtaacactatgttttc-tctttatttt--ttatgtaacacaatgataaatactatgactgtttatta--agatttctcaat---tttcaccattatgttacccacctttcagaatgacaatata---------tgaaatcacaattttttttttcaaattg-----------gttttcagAAGCAAGTATTCTCTTTCTTGAATCTCCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCTGATCTCAAAACTTCAGGGGACAAAAGGACAG
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G36600.1 (Glycine max), 3'ss of exon 2
gtaccaaaaattccataattcaatatttatttaaattacatgacacaatgctagttgatgatccacatattaccagacaaaatagtgtatcatgcccttgtataaaacataggtctaattgatgaattaacagtccacttaaacccctctacttcttttcgatcttttcttctctatgtttgcagTAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACACAAATACAAGCTCCGATCTCAAAAACTCCGGTGATCGACGAACAG
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-----------------------------------------------------------------tgttttattaagctttctcg-atttttcaccattatgtcacccacctttcagaatgacaatataa------acacaa-------------ttttctttcttttttcaaattggttttcagAAGCAAATGTCCTCTTTCTTGAATCGCCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCTGATCTCAAAACTTCAGGGGACAAAAGGACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351027932|gb|FQ425833.1|FQ425833EST: TAACAGAACTGGTTCATCTCTTTATCTCAACAAGTATTCATGGAATAGAG TAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACA
genomic: TTACAGAACTGGTTCATCTCTTTATCTCAACAAGTATTCATGGAATAGAGgtaccaaaaa ... atgtttgcagTAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtccacttaaacccctctacttcttttcgatcttttcttctctatgtttgcagTAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACACAAATACAAGCTCCGATCTCAAAAACTCCGGTGATCGACGAACAG
cccctctacttctttt CT-rich tract
acttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccaaaaattccataattcaatatttatttaaattacatgacacaatgctagttgatgatccacatattaccagacaaaatagtgtatcatgcccttgtataaaacataggtctaattgatgaattaacagtccacttaaacccctctacttcttttcgatcttttcttctctatgtttgcagTAGCAAATATTCTCTTCCTGGAATCACCTGCTGGTGTCGGCTTCTCCTACACAAATACAAGCTCCGATCTCAAAAACTCCGGTGATCGACGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT