1 5' 3' | 2 5' 3' | 3 5' 3' |
...atattcttatttatataaacatatggcttctcttctaaattgctaaatgatatatttttccccctgatagtcaccatttctttgcttgtcttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGAATCCATTTGCAGAATCTTACATACCGCTCTCCAAGAGAGAACCTAAAAA
species | Vitis vinifera |
transcript | Vv11s0016g04410.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAG TGTGATCTGTTGTACAAATTGAGAAAATGAAGTCAGGAACATCATCTTTGAEST: gi|110723373|gb|EE100611.1|EE100611
genomic: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAGgtaggcgaag ... ttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGA
EST: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAG TGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGAEST: gi|110691180|gb|EE068986.1|EE068986
genomic: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAGgtaggcgaag ... ttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGA
EST: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAG TGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGAEST: gi|71857777|gb|DT006832.1|DT006832
genomic: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAGgtaggcgaag ... ttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGA
EST: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAG TGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGA
genomic: TTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAATAAAAGgtaggcgaag ... ttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGA
aatgatatatttttccccctgatagtcaccatttctttgcttgtcttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGAATCCATTTGCAGAATCTTACATACCGCTCTCCAAGAGAGAACCTAAAAA
ccatttctttgcttgt CT-rich tract
tatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattcttatttatataaacatatggcttctcttctaaattgctaaatgatatatttttccccctgatagtcaccatttctttgcttgtcttttcgacagTGTGATCTGTTGTACAAATTGAGACAATGAAGTCAGGAACATCATCTTTGAATCCATTTGCAGAATCTTACATACCGCTCTCCAAGAGAGAACCTAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - ataaaca
- - - - - - - - - - -tatggct
- - - - - - - - - - - - - - tctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtc