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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaaatgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgagggaaccatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG

Basic information

species Vitis vinifera
transcript Vv11s0016g04290.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g39344.1 (Oryza sativa), 3'ss of exon 2
gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaaatgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgagggaaccatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG
                                                       ||  | |     || ||||| ||  ||   |  |   |     || |   || || ||    ||||                |     |||| |  | | |||  || |  | | ||   |   |   |||  ||   |||||||| |||||||||||||| ||||  || ||||||||||||||||| |  ||||| |||||||| |||
-------------------------------------------------------gtgatcacctctctgtttttattcgttgaaa--aagctgggccttgtacattgaacatgctgtttt----------------gcgcctttttatt-tccggagcattggagatgtttgcaaataag--attcatgaccaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG

upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G047564_T03 (Zea mays), 3'ss of exon 2
gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaaatgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgagggaaccatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG
                                                               ||    ||  || |  |||  | | ||  |   ||   || ||    |||| ||| |      || |   ||   |    |||  |  | | |||  || |  | | |||  |    |  |||  |||| |||||||| |||||||||||||||||||  |  ||||| ||||| |||||||  ||||| |||||||| |||
--------------------------------------------------------------gtgattcttaattttcttttttcttaagggtatgttaacttgttaagcaatc-aatgtc----gaacacggtgatctgccttttcatt-tccggagcattggagatgctttcaaat--atgattcatggacaatgcagGGATGGATATTAAGGGGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAG

upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G35260.1 (Glycine max), 3'ss of exon 2
gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaa-atgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgaggga-accatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG
                ||  | |      ||        || ||||| | || || | |||| |     |   ||||| |  ||  ||    |  || ||   || |||   |  || | | ||        || |   | | ||| | |  || |||||| |||||||| ||||||| |  |||||| ||||  |||||||| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | |||||||||
---------------gtatgattgaggcattgggggaaatacataatttattaatcttttaatacaacgtgcgtttgtagcctaa-atagattaaaaattagcttcttttgcagatattctgtt--------ttcgatttgaggttatttggttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG

upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G04460.1 (Glycine max), 3'ss of exon 2
gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaa-atgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgaggga-accatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG
                ||  |||      ||        |||||||| | || || | ||||     |     ||| | | |||  ||    |  || ||   || |||   |  || | | ||    |   |||| |||  | ||| ||  || |||||| |||||||| ||||||| |  |||||| ||||  |||||||| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | |||||||||
---------------gtatgactgaggcattgagggaaataaataatttattaatcttttaatgcaaagcgcgtttctagcttaa-atagattaaaaattagcttcttttgcagatattctgttttcga---tttgaggt--tatttggt--ttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaattctgagtgttaggtaagattttgagggaaccatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG
                    taagatttt  TA-rich tract