Sequence
atgc intronic sequence ATGC exonic sequencegtatttatgttcatccacttgaatttatcttgttaggctaataaatgtttccatgctttgtaatccagttatatctttagttttcaaaagttgtagcgtttagctaacaatgacctgttgatcagAGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 2
------------------------------gtatttatgttcatccacttgaatttatcttgtta---ggctaataaatgtttccatgctttgtaatccagttatatc--------tttagttttcaaaagttgtagcgttt--agctaacaatg-----acctgttgatcagAGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATG
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gtactcttcttctgtcatttgatttgaggtttattttggtttggttgctgagaatggtttgattaccttgtcagcgagattttatgtgatttagatttctctgccaccaagcatggcagagttttataactttctggctgctcgaactgattgttttcgtaatatttgaacagCGAAAGCTTGCCCAAAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATG
upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 2
------------------------------gtatttatgttcatccacttgaatttatcttgttaggct---aataaatgtttccatgctttgtaatccagttatatctttagttttcaaaagttgtagcgttt----agctaacaatgacctgtt------------gatcagAGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATG
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gtactcttcttctggcatttgattcgaggtttattttggtttggttgctgagaattgtttgattagcttttcagcgaccttttatgtgatttgtatttctctgcaaccaagcatggcagagttttacaactttttggcggcttaaactgatttgttttcgtaatatttgaacagCGAAAGCTTGCGCAAAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATG
upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 3'ss of exon 2
gtatttatgttcatccacttgaatttatcttgttaggctaataaatgtttccatgctttgtaatccagttatatctttagttttcaaaagttgtagcgtttagctaacaatgacctgttgatcagAGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATG
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-------------------------------------gtattgcttatctttcaactttctgcttctgttattttatta--ttatagctgtggtcataatttgcttttgtt-atgttttgatcagAGAAAGTTTGCTCAACGATCAGAGAGAGTCAAATCTGTTGATCTGCATCCTACTGAACCATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatctttagttttcaaaagttgtagcgtttagctaacaatgacctgttgatcagAGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATG
agctaac putative branch site (score: 2)
tttagttttcaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttatgttcatccacttgaatttatcttgttaggctaataaatgtttccatgctttgtaatccagttatatctttagttttcaaaagttgtagcgtttagctaacaatgacctgttgatcagAGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA