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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatttgggttctctaacccttctagcatatttttgtttcagtgcagttaagtgctgtgacatatgcttctgattaatattgattagaatttattattcatcaaagtaatgttgggtttttccagGCAATATTTTGTCAATGATGATGACTCTGTTGCCCAAAAG

Basic information

species Vitis vinifera
transcript Vv11s0016g02850.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416399|gb|EC982380.1|EC982380
EST:     ACCTATCACAATCCTTTGCAAGATAATCCTGCATACTCAGTTGTTAA                         GCAATATTTTGTCAATGATGATGACTCTGTTGCCCAAAAG
genomic: ACCTATCACAATCCTTTGCAAGATAATCCTGCATACTCAGTTGTTAAgtaagttgat ... gtttttccagGCAATATTTTGTCAATGATGATGACTCTGTTGCCCAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattaatattgattagaatttattattcatcaaagtaatgttgggtttttccagGCAATATTTTGTCAATGATGATGACTCTGTTGCCCAAAAG
       tattgat  putative branch site (score: 3)
                                              tttttcc  putative PPT
     aatattgattagaatt  TA-rich tract