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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTG

Basic information

species Vitis vinifera
transcript Vv11s0016g01930.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G07520.1 (Glycine max), 3'ss of exon 2
gtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTG
                                             |||       ||    | | | |||| ||| | |  | ||  | | |  | || ||  ||  ||     ||  | || | |    |    |||| |   |   |  || ||     | |   |   |||| ||||||||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
--------------------------------------------gtttgcccctcttccctc-tatttttcatgtctatcct-gcaaaatttggatttccaacttgtatgcatgcat-ttatctgtgtgcagctgttttaacttttttgtcatcgg-----tgtgcatttatgtt-ttgcagTATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTG

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 2
gtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTG
                                    |  | |    ||| ||  || |||   ||||  | |    |   | |  |   |||    ||| ||||    ||||||    | |    | |    | |||    | || |    ||  |    ||||      |||||  |||||||||||||||| ||||   |||| ||||||||||||||||| ||||||||||| ||||| || || ||||| ||
------------------------------------gttttgcttcttccatgtttaaat---tgtacat-tcacctgcaacaattt-ttctgttcttttatttatggtcttgattt-tgacggttcaggttttatt----gtctgctttaatgagtgttttat------ttgtt-ctgcagTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTG

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 2
gtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTG
                                    |  | |    ||| ||  ||||||   || |||       |   | |  |  || ||   ||| ||||   | |||||        || | |    |    ||  |    | ||| ||   ||    | | | |||  |  |||||||||||||||| ||||   |||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||
------------------------------------gttttgcctcttccatg-tttaat-tgtgcattc---acctgcaacaattttctgttct-ttttatttatgaccttga--------ttttgacggttcgggttttgttgtctgctttaatgag----tgttttatttgttctgcagTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGCTCAAAGTCATTGAGAGACTGGCCCCTCTTCATGTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTG
     taattttga  TA-rich tract