1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtatattgatatgttttcgtgaaaatttcttttcctccgtttgttttgcattgctcatgtcagtaccatcaattgaaagatggataattcttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAAGGGACTTGATGTAATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC
species | Vitis vinifera |
transcript | Vv11s0016g01920.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAEST: gi|30301294|gb|CB978088.1|CB978088
genomic: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
EST: TTTATGCATAGAN GTTTTGAAAAACCTTCTGCAACCCTTCAAAGAGGAATTGTTCCCTTTTGCEST: gi|110723538|gb|EE100968.1|EE100968
genomic: TTTATGCATA-TGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGC
EST: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAEST: gi|110370832|gb|EC934384.1|EC934384
genomic: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
EST: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAEST: gi|110696480|gb|EE072635.1|EE072635
genomic: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
EST: CTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAEST: gi|37190367|gb|CF609716.1|CF609716
genomic: CTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
EST: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAEST: gi|110712119|gb|EE089376.1|EE089376
genomic: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
EST: GGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAEST: gi|110696050|gb|EE074763.1|EE074763
genomic: GGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
EST: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATG GTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
genomic: TGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGgtagaccaat ... cttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCA
tttgcattgctcatgtcagtaccatcaattgaaagatggataattcttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAAGGGACTTGATGTAATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC
ttcttcgt CT-rich tract
ataattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatattgatatgttttcgtgaaaatttcttttcctccgtttgttttgcattgctcatgtcagtaccatcaattgaaagatggataattcttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAAGGGACTTGATGTAATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaga