1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGATTCAAGTTTCCTGAGAACAGTGTGGAGTTGTATGCCGAGAAAGTCAACAA
species | Vitis vinifera |
transcript | Vv11s0016g01380.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|351015000|gb|FQ444289.1|FQ444289
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|26262026|gb|CA813089.1|CA813089
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAGAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|26261974|gb|CA813037.1|CA813037
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|349832316|gb|FQ420877.1|FQ420877
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|71869842|gb|DT018897.1|DT018897
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|351043060|gb|FQ443902.1|FQ443902
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|110712407|gb|EE089992.1|EE089992
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|37184104|gb|CF603458.1|CF603458
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGATEST: gi|26267581|gb|CA818644.1|CA818644
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|351025652|gb|FQ426666.1|FQ426666
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|34546837|gb|CF515069.1|CF515069
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|33402357|gb|CF207984.1|CF207984
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|110389857|gb|EC954729.1|EC954729
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|34546658|gb|CF514890.1|CF514890
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|33402921|gb|CF208548.1|CF208548
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|110684969|gb|EE062852.1|EE062852
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|110687640|gb|EE065280.1|EE065280
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|110360898|gb|EC924341.1|EC924341
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|110425974|gb|EC992370.1|EC992370
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGATEST: gi|37184006|gb|CF603360.1|CF603360
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
cgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGATTCAAGTTTCCTGAGAACAGTGTGGAGTTGTATGCCGAGAAAGTCAACAA
ttctgac putative branch site (score: 2)
ttttctgactctcctt CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGATTCAAGTTTCCTGAGAACAGTGTGGAGTTGTATGCCGAGAAAGTCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG