Sequence
atgc intronic sequence ATGC exonic sequence...attctttgctttttgtcttaatttcttccgttgggaaatcgttttctcctttttcaaacactcaaatggaggaataaatgtgaacgctcatctgctgcagGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G05660.1 (Glycine max), 3'ss of exon 2
-----attctttgctttttgtcttaatttcttccgttgggaaatcgttttctcctttttcaaacactc-aaatggaggaataaatgtgaacgctcatct------gctgcagGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATA
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gtaagatttctataatggtatagcaattaagaacacttgttagttgttactattatattatttcactttgcatatagcgttgaaggactaagcttatttttctgaattacagGATATACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTA
upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G17050.1 (Glycine max), 3'ss of exon 2
attctttgctttttgtcttaatttcttccgttgggaaatcgttttctcctttttcaaacactca---aatggaggaataaatgtgaacgctcatctg-ctgcagGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATA
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---gtaagatttctataatagcatagtaattaagaacacttgttacttttattttcactttgcatagagttaaggactaaacgttaattttttttggattacagGATATACAGCATCGTTACCATGGTCAACAAGGATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTA
upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G19600.1 (Glycine max), 3'ss of exon 2
---------------------at-tctttgctttttgtcttaatttcttccgttgggaaatcgttttctcctttttcaaacactcaaatggaggaataaatgtgaacgctcatc--------tgctgcagGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATA
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gtaagaattttgttataattaatataagtactcattattattaatgtattcatatgaaataagcctaaattattcttggagaactaaataattaaccttttattattctttattgtggcaattaattcagGATTCTCGGCATCACTTTCATGGTCAACGAGAATGAAAATTGCTGTTGGAGCTGCGAAGGGTTTAGCATTTCTTCATGAAGCTGAGAAGCCAGTCATCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcctttttcaaacactcaaatggaggaataaatgtgaacgctcatctgctgcagGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATA
ctcatct CT-rich tract
aataaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attctttgctttttgtcttaatttcttccgttgggaaatcgttttctcctttttcaaacactcaaatggaggaataaatgtgaacgctcatctgctgcagGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - ttcttcc
- - - - - - - - - - - - - - - - -ggaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataa