1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggtgtttgaatctgatttattttgatgaagtgtttgaaaacagagtgtggtggattgaatggtttttttttttttttttagtgaatttcgtttttggattgagttcagactgagtgtttattattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATGGATG
species | Vitis vinifera |
transcript | Vv11s0016g00830.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATEST: gi|30252087|gb|CB968726.1|CB968726
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
EST: CTCTGCAGTCGATATGTTATAAGCGCGGCTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATEST: gi|71856942|gb|DT005997.1|DT005997
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
EST: CTCTGCAGTCGATATGTTATAAGCGCGGCTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATEST: gi|71864847|gb|DT013902.1|DT013902
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
EST: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATEST: gi|71864848|gb|DT013903.1|DT013903
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
EST: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATEST: gi|161721519|gb|FC070079.1|FC070079
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
EST: CTCTGCAGTCGATATGTTATAAGCGCGGCTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATEST: gi|110707370|gb|EE083712.1|EE083712
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
EST: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAG AGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
genomic: CTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGgttggtgttt ... tattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGAT
tttagtgaatttcgtttttggattgagttcagactgagtgtttattattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATGGATG
tgtttattattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgtttgaatctgatttattttgatgaagtgtttgaaaacagagtgtggtggattgaatggtttttttttttttttttagtgaatttcgtttttggattgagttcagactgagtgtttattattgaacagAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA