1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttctgcagcaaaggcttgtgtgtatgtattcttctcattagtagattccatttctcctttatcaggatttttaagcttttgtttttatctataattgcagGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAG
species | Vitis vinifera |
transcript | Vv11s0016g00700.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGT GTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTEST: gi|156737274|gb|EV241395.1|EV241395
genomic: TTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTgtgagtgtca ... ataattgcagGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGT
EST: TTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGT GTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTEST: gi|294966632|gb|GW839623.1|GW839623
genomic: TTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTgtgagtgtca ... ataattgcagGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGT
EST: TTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGT GTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGT
genomic: TTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTgtgagtgtca ... ataattgcagGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGT
ttccatttctcctttatcaggatttttaagcttttgtttttatctataattgcagGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAG
atttttaagcttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgcagcaaaggcttgtgtgtatgtattcttctcattagtagattccatttctcctttatcaggatttttaagcttttgtttttatctataattgcagGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
-tctgcag
- - - - - - -gcttgtg
- - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - cttctca