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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtttacacattattgtggaattgggattctcagagacagttgagttgacaagtgccatcacattttgcaattcttgctgcttctttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACATCAATTGATTGCTGGGCTGTATTTGCTTCAGTTCTGGCTAATGTAATATG

Basic information

species Vitis vinifera
transcript Vv10s0116g01850.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G11420.1 (Glycine max), 3'ss of exon 2
gtttggtttacacattattgtggaatt-----gggattctcagagacagttgagttgacaagtgccatcacattttgcaat----tcttgctgcttctttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACATCAATTGATTGCTGGGCTGTATTTGCTTCAGTTCTGGCTAATGTAATATG
  ||  ||   | |  | | |||  ||      || |||||| |  |  |||| ||   | || |  || | || |    |    ||||  | | | | ||||||||||||||| | ||| |||||  || ||| ||||||| |||| ||  ||||| |||||||||||||||  || |||||  || |||||||||||||||||||
-gttctttcctagacgactttgggtttttttttgggttctcaaatgc--ttgaatttggatgttctctccccttctctcttactgtctttatccatgtatcttgcagGACTTTGCACTTTGAACTTTACTACTGCTGAAAGTTTGATAAGTGTGACAGCAATTGATTGCTGGGAAGTTTTTGCACCATTTCTGGCTAATGTAATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349813556|gb|FQ413790.1|FQ413790
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349813525|gb|FQ413759.1|FQ413759
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAC
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349809398|gb|FQ411896.1|FQ411896
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349824836|gb|FQ414694.1|FQ414694
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|71857258|gb|DT006313.1|DT006313
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349821376|gb|FQ410997.1|FQ410997
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|71858739|gb|DT007794.1|DT007794
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|37188012|gb|CF607363.1|CF607363
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|351057193|gb|FQ450900.1|FQ450900
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|71858685|gb|DT007740.1|DT007740
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349815046|gb|FQ410269.1|FQ410269
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349820123|gb|FQ404845.1|FQ404845
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349808867|gb|FQ406717.1|FQ406717
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagttgacaagtgccatcacattttgcaattcttgctgcttctttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACATCAATTGATTGCTGGGCTGTATTTGCTTCAGTTCTGGCTAATGTAATATG
    agttgac  putative branch site (score: 4)
                                ttcttgctgcttcttt  putative PPT
                     acatttt  TA-rich tract