1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tcgtttgtttttcatcgatattctcagtttccaagcagttcttatgatcgcgcattaattgtggatcggagctctgaagcgagatttttgaatttgttagGGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCTTCTGGAAGCTCGGCTGCTTCG
species | Vitis vinifera |
transcript | Vv10s0116g01480.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCTAANNNNNNNNCTTTCTCTTTCATCAATCTCGTCATCTTCATCCAG GGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCTEST: gi|71862364|gb|DT011419.1|DT011419
genomic: ACCCTAATTTTTTTTCTTTCTCTTTCATCAATCTCGTCATCTTCATCCAGgtcgcaattt ... aatttgttagGGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCT
EST: CCCTAANNNNNNNNNCTTTCTCTTTCATCAATCTCGTCATCTTCATCCAG GGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCTEST: gi|161716165|gb|FC066491.1|FC066491
genomic: CCCTAA-TTTTTTTTCTTTCTCTTTCATCAATCTCGTCATCTTCATCCAGgtcgcaattt ... aatttgttagGGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCT
EST: ACCCTAANNNNNNNNCTTTCTCTTTCATCAATCTCGTCATCTTCATCCAG GGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCT
genomic: ACCCTAATTTTTTTTCTTTCTCTTTCATCAATCTCGTCATCTTCATCCAGgtcgcaattt ... aatttgttagGGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCT
gatcgcgcattaattgtggatcggagctctgaagcgagatttttgaatttgttagGGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCTTCTGGAAGCTCGGCTGCTTCG
cattaat putative branch site (score: 3)
atttttgaatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtttgtttttcatcgatattctcagtttccaagcagttcttatgatcgcgcattaattgtggatcggagctctgaagcgagatttttgaatttgttagGGGGCGTTAATTGAAGGCACGATGTGGGCGATTGTGAGGCGAAAGGTTGCTTCTGGAAGCTCGGCTGCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - -tccaagc
- - - - - - - - - - - - - - - - - - - - - - - - -gcgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgaa