Sequence
atgc intronic sequence ATGC exonic sequence...cataaaatgagttatccaccatttaattttttcttccgtggtcttactagtttgttagtatatatattttattgaaatgctcaaatgctgtttattgcagATGTTAAGACTGCAGTGAAAAACAAAGTTCCACTTGTGCGCTCATTAACTCTAAACTGGGTAACGTTTTGTATTGAGACAAGCAACAAGGCTGTTGTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G35140.1 (Glycine max), 3'ss of exon 14
---cataaaatgagttatc-caccatttaattttttcttccgtggtcttactagtttgttagtatatatattttattgaaatgctcaaatgctgtttattgcagATGTTAAGACTGCAGTGAAAAACAAAGTTCCACTTGTGCGCTCATTAACTCTAAACTGGGTAACGTTTTGTATTGAGACAAGCAACAAGGCTGTTGTTCT
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tagtgtataatctttttcctcattatttaaggtatcattgttt---ctcattagtgtttta-tgtttgcttcttgttgagtgtattacatttaatctgttgcagATGTTAAGACAGCCACAAAAAACAAAGTCCCTCTTGTGCGATCGTTAACCTTGACCTGGGTGACTTTTTGTATTGAAACAAGTAACAAGGTTGTTATTAC
upper sequence: Vv10s0116g00460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G32430.1 (Glycine max), 3'ss of exon 12
cataaaatgagttatccacca-tttaattttttcttccgtggtcttactagtttgttagtatatatattttattgaaatgctcaaatgctgtttattgcagATGTTAAGACTGCAGTGAAAAACAAAGTTCCACTTGTGCGCTCATTAACTCTAAACTGGGTAACGTTTTGTATTGAGACAAGCAACAAGGCTGTTGTTCT
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------gtacgttttccctaaatttaatgtatcattgcttg---tcattagtgtttta-tgtttgcttcttgttgagtgtattatatttaatctgttgcagATGTTAAGACAGCCACAAAAAACAAAGTCCCTCTTGTGCGATCGTTAACGTTGACCTGGGTGACTTTTTGTATTGAAACAAGTAACAAGGGTGTTATTAT
upper sequence: Vv10s0116g00460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G35630.1 (Arabidopsis thaliana), 3'ss of exon 11
------------------------------cataaaat--gagttatccaccatttaattttttcttccgtggtcttactagtttgtt--agtatatatattttattgaaatgc--tcaaat--gctgtttattgcagATGTTAAGACTGCAGTGAAAAACAAAGTTCCACTTGTGCGCTCATTAACTCTAAACTGGGTAACGTTTTGTATTGAGACAAGCAACAAGGCTGTTGTTCT
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gcaagagtcagtttatcttggattttattttatgaagctctactgatttgcttatgattatcttttttagatggcgaccaattttgcttaagcatctgtctttcatcagtttccaatcaactttactctcttttgcagATGTGAAGACAGCAGTGAAAAACAAAGTTCCACTTGTGCGTTCTTCAACTTTGACCTGGTTGACATTCTGCCTTGAAACAAGTAACAAAGCTCTTATTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actagtttgttagtatatatattttattgaaatgctcaaatgctgtttattgcagATGTTAAGACTGCAGTGAAAAACAAAGTTCCACTTGTGCGCTCATTAACTCTAAACTGGGTAACGTTTTGTATTGAGACAAGCAACAAGGCTGTTGTTCT
gtcttac putative branch site (score: 3)
tttgttagtatatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataaaatgagttatccaccatttaattttttcttccgtggtcttactagtttgttagtatatatattttattgaaatgctcaaatgctgtttattgcagATGTTAAGACTGCAGTGAAAAACAAAGTTCCACTTGTGCGCTCATTAACTCTAAACTGGGTAACGTTTTGTATTGAGACAAGCAACAAGGCTGTTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -aaaatga
- - - - - - - tccacca
- - - - - - - - - - - - - - - ttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctg