Sequence
atgc intronic sequence ATGC exonic sequence...aaatgcaaattttgccactcaagactttgttgttttatgagaaataaaaaatggtttgtgctttataagttcttagtttggtaatatcgttattttgaagGCAGAGAAGCTTGCAAAGAGGAGAGAAGTGGCAAATGTGGTTTTGGATTTCTCGGTTAGAACCGCAACCACCCACACTCCTCAATTCCTGGGTCTACCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G30460.1 (Glycine max), 3'ss of exon 2
-----------------------------------------------------aaatgcaaattttgccactcaagactttgttgttttatgagaaataaaaaatgg--tttgtgctttat--aagttctta---------gtttggtaatatcgttattttgaagGCAGAGAAGCTTGCAAAGAGGAGAGAAGTGGCAAATGTGGTTTTGGATTTCTCGGTTAGAACCGCAACCACCCACACTCCTCAATTCCTGGGTCTACCTC
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gtatgctatggttttacttttcaacatcttgattgtgtccttattctgtgaagaaatatgtgcttcattgtttgagttgtttccatttgtgcatattttggtttttgtatttgtgatctggtaaacttcttcaaccaacatgttcttgatttttgaaatcttgaagGCAGAAAAACTTTCAAGGAGAAGAGAAGTGTCCAATGTGGCTTTGGATTTTTCTGTGAGAACTGCAACCACACACACTCCACAATTTTTGGGTCTGCCAC
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G13590.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------------aaatgcaaattttgccactcaagactttgttgttttatgagaaataaaaaatggtttgtgcttt-ataagttctt----------agtttggtaatatcgttattttgaagGCAGAGAAGCTTGCAAAGAGGAGAGAAGTGGCAAATGTGGTTTTGGATTTCTCGGTTAGAACCGCAACCACCCACACTCCTCAATTCCTGGGTCTACCTC
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gtatagtatggttttacttttcaattttcaagatcttgattatgtccttattctgtgaagaaacacgtgcttcattgtttgagttgtttccatttgtgcgtagtttggtgtttgtgtctgttttgataaacttcttcaaccaacaagttcttgattttcgaaatattgaagGCAGAAAAACTGTCAAGGAGAAGAGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTGAGGACTGCAACCACACACACTCCACAATTTTTGGGTCTGCCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaatggtttgtgctttataagttcttagtttggtaatatcgttattttgaagGCAGAGAAGCTTGCAAAGAGGAGAGAAGTGGCAAATGTGGTTTTGGATTTCTCGGTTAGAACCGCAACCACCCACACTCCTCAATTCCTGGGTCTACCTC
ttatttt CT-rich tract
taatatcgttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatgcaaattttgccactcaagactttgttgttttatgagaaataaaaaatggtttgtgctttataagttcttagtttggtaatatcgttattttgaagGCAGAGAAGCTTGCAAAGAGGAGAGAAGTGGCAAATGTGGTTTTGGATTTCTCGGTTAGAACCGCAACCACCCACACTCCTCAATTCCTGGGTCTACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-aatgcaa
- - - - - - - ccactca
- - - - - - - - - - - - - - - - - - atgagaaa
- - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc