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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgatttccatgattttccttacccttattttccattttgtttttgtttttcttagtgtcatagaagtagattttgagtgagtgatttttaatgctgatttatttgatttaagcatattagtttgcttgatccatttagtatagacagtatgtgatttgtgttaatgggctatggattttttgggttcgacagCTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAG

Basic information

species Vitis vinifera
transcript Vv10s0071g01100.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721026|gb|FC069980.1|FC069980
EST:     TTGGAATCACTTCAACTGCAAGATTGATGAGAAAACCATCAAAGAAACTG                         CTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTA
genomic: TTGGAATCACTTCAACTGCAAGATTGATGAGAAAACCATCAAAGAAACTGgtctgatttc ... ggttcgacagCTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTA
EST: gi|294965582|gb|GW837181.1|GW837181
EST:     TTGGAATCACTTCAACTGCAAGATTGATGAGAAAACCATCAAAGAAACTG                         CTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTA
genomic: TTGGAATCACTTCAACTGCAAGATTGATGAGAAAACCATCAAAGAAACTGgtctgatttc ... ggttcgacagCTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTA
EST: gi|161717651|gb|FC066276.1|FC066276
EST:     TTGGAATCACTTCAACTGCAAGATTGATGAGAAAACCATCAAAGAAACTG                         CTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTA
genomic: TTGGAATCACTTCAACTGCAAGATTGATGAGAAAACCATCAAAGAAACTGgtctgatttc ... ggttcgacagCTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatagacagtatgtgatttgtgttaatgggctatggattttttgggttcgacagCTGATGCTCTGGTTGCAACTGGTCTTGTTAAACTTGGATATGAGTATGTTAACATAG
                     tgttaat  putative branch site (score: 3)
                                     atttttt  TA-rich tract