Sequence
atgc intronic sequence ATGC exonic sequence...ttttggcatgggttactctggtcagttagaagactctatttggggaagcaatgcatttatattttacttattcatttttttaatgtaattatgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G00220.1 (Glycine max), 3'ss of exon 2
ttttggcatgggttactctg--gtcagttagaagactctatttggggaagcaatgcatttatattttacttattcatttttttaatgtaatta--tgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
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-tgggggttgtgttattatacagtcaacaaatgaatgatacttgtgtaacatatac---tgtgtcttggatacagatctaaccattgctatcatctgccttcagGTTGTCGTTGATGTTGGATGCGGTACAGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGG
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G23410.1 (Glycine max), 3'ss of exon 2
ttttggcatgggttactctggtcagttagaagactctatttggggaagcaatgcatttatattttacttattcatttttttaatgtaat---tatgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
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------------gtaattaagctaacttcagaacttgattttta-aattattatttttttggctctattttttgccctagtgggttatctcgtccgcatgcagGTTGTACTTGATGTTGGATGCGGCACTGGCATCCTTGCTATATTTTGTGCTCAGGCTGGTGCAAGACGG
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA0048S00320.1 (Glycine max), 3'ss of exon 2
-ttttggcatgggttactctggtcagttagaagactctatttggggaagcaatgcatttatattttacttattcatttttttaatgtaatta--tgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
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gatatctcatgcataatt-tgcttgttttgttaatttcttttggattgatgtttctcaaggattttcc--agtctttccttccccttaatcatctgccttcagGTTGTGGTTGATGTTGGATGCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGG
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G20020.2 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------------ttttggcatgggttactctggtcagttagaagactctatttggggaa-gcaatgcatttatattttactt----attcatttttttaatgtaattatgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
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gtaatactctcgttactgtaatttctcaactatggtcttaaatcttcacaattgatatttgaacaagattcaaattgggactgttgtttacttttagcttagcctgtgtgtataacgtggtagtttattgttttgtttgaaaacctaatgctgcattg-aatgcttgtaacagGTCGTGGTGGACGTTGGCTGTGGAACTGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGTGCAAAACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagcaatgcatttatattttacttattcatttttttaatgtaattatgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
ttttaat putative branch site (score: 3)
atttatattttactta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttggcatgggttactctggtcagttagaagactctatttggggaagcaatgcatttatattttacttattcatttttttaatgtaattatgcttacagGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGA
- - -gcatggg
- - - - - - - - - - - - - -agaagac
- - - - - - - - - - - - - - - - - - - - - - - - caatgca