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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG

Basic information

species Vitis vinifera
transcript Vv10s0071g00210.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G00320.1 (Glycine max), 3'ss of exon 3
gtaag-taaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG
||||| |||| ||    |    |  |   | |    | | |   |  |     | |  |   |    | |  |  |||   | | || |||||||| || |||||    || ||  |  |||| ||||| || ||||| ||||| || || |||||||| |||||||||||||| ||||||||||| || |
gtaagataaattacaatatttctcaagagtggtgcatttttggctttactaactatgcagtctcccctctccctgtgggcctta-ttatagGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAGCCGTCAG

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G23660.1 (Glycine max), 3'ss of exon 3
gtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttaccttt--ttattttgcactggttttcaattttagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG
|||||  || |   ||||  ||     | | ||  |  ||   |   |    || ||| || |  |  |    |||    | | |||  |||||||||||||||||    || ||  || | || || || || ||||| ||||| || || |||||||| |||||||| ||||| ||||||||||||||||
gtaagataagtg--gcaatatttctcaagtaatgttcagttcttttttggtctgattaactgtactcttcccccaccccctcttaatcatagGTTTTAAAGGTGAAAGAGGAGAGTTTGGTGCCAGCTAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGG

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G42180.1 (Glycine max), 3'ss of exon 1
gtaagtaaactaatgcaaacttggatgattgattgtatgtcaa---tgaatctgttgtttacctttttattttgcactggtt--ttcaattttagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG
|| ||  || | |    |  |   | || || | | |  |||    ||  | |  |   ||     |   |   |||  ||      |||| |||||||| || |||||    || ||  |  |||| ||||| || ||||| ||||| || || |||||||| |||||||||||||| |||||||| || || |
gtgagataaattacaatatttctcaggagtggt-gcacttcatttttggctttactaactatgcagtctctccccacctgtgggcctaattatagGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCAG

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattt----tagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG
||||||||  |  || |    |            |||      | ||| | |    ||   ||| || |   |||  |||  || ||     ||||| |||| || |   | || |  ||  |||||||||| || ||||| ||||| || || || || |||||||| ||||||||||||||||||||||| |
gtaagtaactttttgtatttctaag---------gtagccaggttaatttttgaagta---tttgatctgaaactactttcaaacttgaaacagGTTATAAAAGTCATATCAGAGACTCTAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAG

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG
|||||| |  |  ||  || ||   ||  ||| ||||    | |        |||||        | | |    |   ||        |||||||||| || ||  | || |   |  |||||||||| || ||||| ||||| || ||||| || || |||||||| ||||| |||||||||||| | |
gtaagtgattt--tgttaaattccctgggtgaatgtaaactattattgtaagtgtttgatcggaaactatctcttcacttgattcaacagGTTTTAAAAGTCAAATCAGAGACTTTAGTACCTGCAAATCCTGATATTCTTGATGGAGTAGACGATCTCATGCAACTAAGTTATTTAAATGAGCCAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttagGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGG
                                          ttttc  CT-rich tract
                   tttacctttttatttt  TA-rich tract