Sequence
atgc intronic sequence ATGC exonic sequence...tttatttttcatttgcactggataaaccgaatgagctcaaggttgacatttcggtttatttagacatgatcacacttgcttacatgcgtaacaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0042g01130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G13240.1 (Glycine max), 3'ss of exon 2
-tttatttttcatttgcactggataaaccgaatgagctcaag-gttgacatttcggtttatttagacatgatcacacttgcttacatgcgtaacaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTG
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aaaaaagcctcactaggaa-ggacatgatga-caagtttatgtataggttgtgttgtagtttaagcttttctaatagttttctattctcgtcttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCA
upper sequence: Vv10s0042g01130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G19670.1 (Arabidopsis thaliana), 3'ss of exon 2
-tttatttttcatttgcact-ggataaaccgaatgagctcaag-gttgacatttcggtttatttagacatgatcacacttgcttacatgcgtaacaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTG
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ttttttttctcgcctacgtttaaatctagtattctagagcaagtgtttcttttgcgattcttacgcatataaatgtcaaaactctc---tgtgttttccgcagATGCGGGCATGAGTTTTGCTACTCGTGTGGAGCAGAGTACAGAGAAGGGCAACAGACTTGCACGTGTGCTTTTTGGGACGATGATGAAGAAGAACAAGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349829983|gb|FQ420243.1|FQ420243EST: TGCCGGAGGATGATTGAGCTCACGCAAGGGTGCTGTCACATGACCTGCTG GTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACA
genomic: TGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatgga ... acaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatttcggtttatttagacatgatcacacttgcttacatgcgtaacaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTG
tttatttaga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttatttttcatttgcactggataaaccgaatgagctcaaggttgacatttcggtttatttagacatgatcacacttgcttacatgcgtaacaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - -catttgc
- - - - - - - - - - - -aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcgt