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...catttcagttccactgaatgtttccagcatttccattctttctctcttagagtgctaaaaatttattgaatttttatttttttttgttgactaaatgcagACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGAGCAAATCAATCTTCTGAAATATTTTGAGAGAAAGGAGACAGAGTATATG
species | Vitis vinifera |
transcript | Vv10s0003g05720.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCACAAATGAAAAATCTGCAAGACGGACCCGAGAG ACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGAEST: gi|110713213|gb|EE088935.1|EE088935
genomic: AAAGCACAAATGAAAAATCTGCAAGACAGAAAGGAGAGgtaatttaga ... ctaaatgcagACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGA
EST: GAGAATCATTACAAAGCACAAATGAAAAATCTGCAAGACAGAAAGGAGAG ACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGA
genomic: GAGAATCATTACAAAGCACAAATGAAAAATCTGCAAGACAGAAAGGAGAGgtaatttaga ... ctaaatgcagACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGA
cttagagtgctaaaaatttattgaatttttatttttttttgttgactaaatgcagACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGAGCAAATCAATCTTCTGAAATATTTTGAGAGAAAGGAGACAGAGTATATG
gactaaa putative branch site (score: 2)
taaaaatttattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttcagttccactgaatgtttccagcatttccattctttctctcttagagtgctaaaaatttattgaatttttatttttttttgttgactaaatgcagACGCTGGGTCTTGGAGAGGAAACTTGCTGATGCTGATGTATCTGAGGAAGAGCAAATCAATCTTCTGAAATATTTTGAGAGAAAGGAGACAGAGTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - -tccactg
- - - - - - - - - - -ttccagc
- - - - - - - - - - - - - - - - ccattct
- - - - - - - - - - - - - - - - - - - - tctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaat