Sequence
atgc intronic sequence ATGC exonic sequencegttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattataaacccaacatattgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G10030.2 (Glycine max), 3'ss of exon 2
-----------gttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattataaacccaacatattgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
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gtaaccatagaaatcctctaattattactatttttctatcatggttgatttaaccctgtgaatatttatcttgcactaactt---attggc-atttcatggtgaactca---taatctccatagGCTGTGAATGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGAATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTGG
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G29010.1 (Glycine max), 3'ss of exon 2
-----------gttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaata-tttataagttgtctatctgattataaacccaacatatt--gtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
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gtaatcatggaaattctctaattattattatttttctaacatgattgatttagccatgtgaatatttatgttgcactagcttattggt-----atttcatggtgaactcataatctccattccatagGCTGTGAACGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACATATATCTGCTGCACTGCAGTCTTTGG
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G27240.1 (Glycine max), 3'ss of exon 2
gttcattcaaccatatatatatatatatatatatatatgtatt---tttatttttcctttttctgaaatatttataagtt-gtctatctga---ttat--aaacccaacatattgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
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------gtaatcatggaaa-atctttttattttatcaggtaatgggtttaatttagccctttgaatattcgccacacattagctcattagagttttatgggaactcaat-tcttttccatagGCTGTGAATGATCTTTGCCTTTACAAAATGGGGGGAAATCTTTATCAACGAATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTAG
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G10180.1 (Glycine max), 3'ss of exon 2
--gttcattcaac-catatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattat--aaacccaacatattgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
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gtaatcatggaaaacctttttattttattaagta-atgggtttaatttagccctgcgaatattcgtcacac--attagctcattagagttttatgggaactcaat-tcttttccatagGCTGTGAATGATCTTTGCCTTTACAAAATGGGGGGAAATCTTTATCAACGAATTACAAAGGAGTGTGAAGAGCATATATCTGTGGCACTGCAGTCTTTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352773043|gb|FQ470658.1|FQ470658EST: CTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAG GCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGG
genomic: CTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaa ... ttgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgaaatatttataagttgtctatctgattataaacccaacatattgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
atctgat putative branch site (score: 4)
aatatttataagttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattataaacccaacatattgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAGTGTGAATCACATATACGTGCAGCATTACAATCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG