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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC

Basic information

species Vitis vinifera
transcript Vv10s0003g02830.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 3'ss of exon 7
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
                       || |||| |  | | ||||      || ||||| |||  |  ||  | | ||  ||   |  ||    |     | ||      ||||  |||||||||||||||| ||||||||||||||||||| || || |||||||| ||| ||||||| |||||||| || ||||| || || |||||||| ||||| ||||
---------------------gtttccatcctagcccaattatc--caatgttgtttcttaccccttgatttgttgtaaccatcttag---aaatactaaagaccatcttttaaatgcagATGATGTGGAGGCTAAATTTCTTTGTGGCCTTCTGTTGCATTGTCCTTGACAATGATTACATGCTGTATTATATATGTCCAATGCACACACTTTTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 3'ss of exon 7
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
       ||  | |||||| || |  |  || |    | |      |  | | ||   ||||||||| ||  |||| |   |  ||  ||||   ||  || | |   ||||||||||||||||||||| | || ||||| |||||||| || ||||||||||| ||| ||||||| |||||||| || || || ||||| ||||||||  | || ||||
------gtgcca-ttctgatctttaaccccaatctgttctatatgatactttagtatgttttcatttccttgatttaa---tgcatggtttacactgacaaccata--tttctaatgcagATGATGTGGAGACTTAATTTTTTTGTGGCTTTCTGCTGCATTGTCCTTGACAATGATTACATGCTCTATTACATATGCCCAATGCACACTTTGTTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC208418.3_FGT009 (Zea mays), 3'ss of exon 3
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||| | |       |||| |  | |   ||     | || ||||||| | |||||||||||||| || |||||||||||||||||||||| |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgtctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtattttttgttaccgccttttaagcact--agaccaataactatactttcca-tgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTTTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC218988.3_FGT003 (Zea mays), 3'ss of exon 2
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
||| |  || ||  ||  | | || | ||  | |          | |||  ||  ||   |  ||||| | |       |||| |  | |   ||     | || ||||||| | |||||||||||||| || ||||||||||||||||||| || |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgtctatgctacctc--atcagtcttattttgtgctatgccctaatgagtttagtctcctgtattttttgttaccgccttttaagcact--agaccaataactatactttcca-tgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G147351_T01 (Zea mays), 3'ss of exon 1
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | |||||||||||||| || ||||||||||||||||||| || |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgcctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 2
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | |||||||||||||| || ||||||||||||||||||| || |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgcctatgctacctc--atcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G463445_T01 (Zea mays), 3'ss of exon 2
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | || ||||||||||| || ||||||||||||||||||| || |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgcctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgtagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G458538_T01 (Zea mays), 3'ss of exon 2
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | | |  |   ||| |     ||| |    || || ||||||| | |||||||||||||| |  ||||||||||||||||||| || |||||||| ||| |||||||   |||||| || ||||| ||||| |||||||| || || ||||
gtgcctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgt-taccgccttttaagcactagaacaataa-ctatactttcca-tgcagATGATGTGGAGATTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G25780.1 (Glycine max), 3'ss of exon 8
---gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttagg-atgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
    |    |  || |   | ||   |  |||  || || || |    ||   | |||  || | | ||| || |   ||  |||  ||||   |   |  | | || |||   |    ||||||||||||||||||| ||||| |||||||| || || || ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| 
gtaatagagtccttgaccttaaa---taccatttttgctttactttgtgtc-cactgt--ctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
gtgacc-ttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataattta-ggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
|| |   |  || |   | ||   |  |||  || || || | |   |   |||||  || | | ||| ||||   ||  |||  ||||   |   |  | | || |||   | |  ||||||||||||||||||| ||||| |||||||| || || || ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| 
gtaagagtcattgaccttaaa---taccatt-ttgctttacttggtatc-cattgt--ctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
                                          ||    || |  ||||     |   |||     |     ||||||||          ||||||   | |||  |||||||||||||| |||| || |||||||| || |||||||| |||||||| ||||| ||||| ||| ||||||| |||||||| |||||||| |||||||| |
----------------------------------------gtgatacaat-tcattccacaaaaagctctcgtcattgtacttgataatccgcatctaaaatcttggttctct--tgcagATGATGTGGAGGCTGAACTTCTTTGTAGCGTTTTGCTGTATTGTTCTCAACAACGACTATATGTTATACTACATCTGCCCAATGCACACTCTTTTCACCC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G29890.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgaccttg-ttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
|| |  |    || ||  || |    |  |   |||  | |   | ||||| || ||           | | | ||||||   | |  ||||   |||  |   |||||||   ||| ||||||||||||||||| || || |||||||| ||||| |||||| |||| ||||||||||| ||||| ||||| ||||| || |||||||| || ||||| |
gtcagatcaactattttcgatcaccatagtttgttcagtttaccatgtgatgttcttttagagagcactatgtctttcaaagctcaagattttt-atgaaagcttttactt---aatccagATGATGTGGCGGCTTAACTTTTTTGTGGCGTTTTGTTGCATTATTCTCAACAATGACTATATGCTGTACTACATCTGTCCAATGCACACTCTATTCACGC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatatt--gttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
     | | | ||||  | || |||  || | ||  | || | |  || |  |  |   | | |  ||||| ||   ||||    |||  |     |||  ||  |||||||  |    |||||||||||||| || || || |||||||| ||| |||||||| |||| || ||||| || ||||| ||||| ||||| || |||||||| || |||||||
---gtcatttcaatt--gcacagtta-attagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaa----gatgctc----atgaaaacttttacttcttc---cagATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAGCTGCATTATTCTCAATAATGATTATATGCTGTACTACATCTGTCCAATGCACACTCTGTTCACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EDP02440 (Chlamydomonas reinhardtii), 3'ss of exon 4
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
  |   ||| |    |          |     |   ||   | |  |   | |    | | ||||   | |   |||    ||    |   |    | |  ||  | |    |   ||||||||||||||| || || ||| | |||   ||    ||| | || || |||||   ||||||||| ||||| |||||||||||||||||           
--gcgtttgctggcacgcgctgaagccgctgctagacttccacaccttgcact----cgtctcatcccc-acgcttcccgcttcccgac--accccgcggttccct-cagATTCGCGCAGATGATGTGGCGCCTCAACTTCATGGTGTTCTTCACGTGCGTGGTGCTCAACAACAGCTACATGCTCTACTACATCTGCCCCATGCACACC----------

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------gtgaccttgtta-attctgaactgttt-catcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatg------cagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
                                  || |  ||| |      || ||||||  | |  ||||   | ||  | |   | ||||| | | | |    |  || |   |||  | |||  | |  ||   |   || |   | |||      ||||||||||||||||| |||||  | ||    |||  ||| || || || ||||||||||||||||| ||||| || || || |||||||| ||||||||||
gtatgtatgagcgtcttgaatatgattagtggcggtaattttggtgcgggttgcactgttagcctgttttcggaactacgaattcaagtgttcatgtacctccagttaatgtt--tttcaaaaatcgaaggggtaccttaatagtgcttgatgatgtgacagATGATGTGGCGGCTCAATTTTCTGGTCTTCTTTGCCTGTATAGTGCTGAACAATGACTACATGCTTTACTACATTTGTCCAATGCACACACTTTTCACTC

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 3'ss of exon 7
gtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
             |   || ||| ||      |     || |       ||| || | || | | || ||       |||     | ||  |     ||  | |  |   | |   |||||||||||||||||| |||||| | ||    ||| |||||||||| || ||||||||||||||||| ||||| ||||| || |||||||| || |||||||
------------ttcgcgatctgctttgagggtgtggaatcaa-----gtatcgtccattcttagttgcttctggataatcggagtcatgcactgactgggt-tcgatgatttg--gcagATGATGTGGCGGCTCAATTTCCTGGTCTTCTTTAGCTGCATTGTACTGAACAATGACTACATGCTCTACTACATCTGTCCAATGCACACTCTCTTCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC
                                            ttctaat  putative branch site (score: 2)
                                    tctttactttct  CT-rich tract
     atatttcaattttgat  TA-rich tract