Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttaggctgtacagaaattttatgttgagccttaaatttttaatgtggcttctaatcttcaatatatgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCA

Basic information

species Vitis vinifera
transcript Vv10s0003g02250.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G29420.1 (Glycine max), 3'ss of exon 2
--------------gtatgctttaggctgtacagaaattttatgttgagccttaaatttttaatg-tggcttctaatct-tcaatatatgctact---agTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCA
               ||  |    |  | |||  |||||   | ||     | ||  |  ||||  ||| || |  ||| ||  | | || | ||   ||||| | || ||||| ||||||||||||||||| ||||||||||| |||||||| ||  | |||||||||  ||| ||||| ||||| ||| | ||||| |
tgtggaaaaaaaaattacacaagtgtatatacttaaattgattctttgtgatcaagctaataatactggttttttttctctctttttttgttgcttgaagTTGTTGGCGATGATTGGAGAACAGTTTGATCACGGAGATGAAATATGTGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGATAAAATTGCTATTTGGACTA

upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G09630.2 (Glycine max), 3'ss of exon 2
----------------gtatgctttaggct-gtacagaaattttatgttgagcc-ttaaatttttaatgtggcttctaatcttcaatatatgc-tactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCA
                | |   ||||  |  || || |   || |  |    |  | ||  |  ||||     || |  |||    | | | | | | ||||| | || ||||| ||||||||||||||||| ||||||||||| || ||||| ||  | |||||||||  ||| ||||| ||||| ||| | ||||| |
tatgatgtttgtgtgagaaaaatttacacaagtgcatatgattaaattcattctatcaagctaataatactattttttttctcttttttgtcccttcaagTTGTTGGCAATGATTGGAGAACAGTTTGATCACGGAGATGAAATATGCGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGAAAAAATTGCTATTTGGACTA

upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G18040.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------gtatgctttaggctgtacagaaattttatgttgagccttaaatt---tttaatgtggcttctaatcttcaatatatgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCA
                |  ||||   ||    | || |      | | | |  ||||   | | |   || || |  | ||  ||   || |  |||||||| ||  |||| ||||| ||||||||||||||||||||||| |||||||||||  ||||  | ||||  |  || || |  ||| || | ||||| |
gtacggtttctattcttcttttattttgactcgtaactcctgcgtcatcatccaattgaatctcac-cggtttttctttttacatgcttggt-ttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262433|gb|CA813496.1|CA813496
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351030478|gb|FQ432416.1|FQ432416
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351043287|gb|FQ444008.1|FQ444008
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351024812|gb|FQ430637.1|FQ430637
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|77585822|gb|DV222012.1|DV222012
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110718702|gb|EE095839.1|EE095839
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|18459494|gb|BM437772.1|BM437772
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|33403709|gb|CF209336.1|CF209336
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|28967647|gb|CB346680.1|CB346680
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30126393|gb|CB911732.1|CB911732
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351041261|gb|FQ447388.1|FQ447388
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351013219|gb|FQ424924.1|FQ424924
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|77586851|gb|DV222569.1|DV222569
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|349830175|gb|FQ420435.1|FQ420435
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30124882|gb|CB910221.1|CB910221
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGANATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30126337|gb|CB911676.1|CB911676
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|32245049|gb|CD710868.1|CD710868
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110401164|gb|EC967763.1|EC967763
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110372842|gb|EC937036.1|EC937036
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30126189|gb|CB911528.1|CB911528
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110370659|gb|EC930270.1|EC930270
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110729229|gb|EE105336.1|EE105336
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30321708|gb|CD004970.1|CD004970
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGANATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351027029|gb|FQ439889.1|FQ439889
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|161712276|gb|FC061899.1|FC061899
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|294966543|gb|GW837678.1|GW837678
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110722220|gb|EE098261.1|EE098261
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|349812898|gb|FQ410540.1|FQ410540
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGGAGATGAATTCTGTGG
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGG-AGATGAAATCTGTGG
EST: gi|71859814|gb|DT008869.1|DT008869
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110720594|gb|EE096655.1|EE096655
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|349809854|gb|FQ398479.1|FQ398479
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|26263843|gb|CA814906.1|CA814906
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|27578982|gb|CB001677.1|CB001677
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351012448|gb|FQ427049.1|FQ427049
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30126203|gb|CB911542.1|CB911542
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|349825143|gb|FQ415690.1|FQ415690
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TCGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110402114|gb|EC968749.1|EC968749
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|33403631|gb|CF209258.1|CF209258
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCAT
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCAT
EST: gi|110713254|gb|EE089012.1|EE089012
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110367998|gb|EC931958.1|EC931958
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110401693|gb|EC968309.1|EC968309
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|161715411|gb|FC066473.1|FC066473
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110426279|gb|EC992681.1|EC992681
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30128062|gb|CB913401.1|CB913401
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|110360035|gb|EC922556.1|EC922556
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|30134592|gb|CB919930.1|CB919930
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351030954|gb|FQ438990.1|FQ438990
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TCGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|351012919|gb|FQ430482.1|FQ430482
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|27581098|gb|CB003793.1|CB003793
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
EST: gi|38516708|gb|CF983883.1|CF983883
EST:     GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACG                         TTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA
genomic: GGACTGTAACCTTTGCTAAAGGGAAATCTGATACCTGTTGGCTTTATACGgtatgcttta ... atgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgagccttaaatttttaatgtggcttctaatcttcaatatatgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCA
                             ttctaat  putative branch site (score: 2)
           ttaaatttttaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctttaggctgtacagaaattttatgttgagccttaaatttttaatgtggcttctaatcttcaatatatgctactagTTGCTAGCCATGATCGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA