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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaccactgcccccgtttcctctgtttggttgccgtgaaaatggaactctgcttttcagtcagttgggtgtaggtttatagtttattcaatgcccaaatctgctgagttttactatatctttgcacttaataaaagttctcgactcttgacagCTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATT

Basic information

species Vitis vinifera
transcript Vv10s0003g01490.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38516696|gb|CF983871.1|CF983871
EST:     TTACTTGGGAACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCT                         CTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAA
genomic: T-ACTTGG-AACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCTgtaagtctac ... ctcttgacagCTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAA
EST: gi|110713153|gb|EE088826.1|EE088826
EST:     TGTACTTGGAACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCT                         CTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAA
genomic: TGTACTTGGAACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCTgtaagtctac ... ctcttgacagCTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctgagttttactatatctttgcacttaataaaagttctcgactcttgacagCTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATT
                          acttaat  putative branch site (score: 4)
                                             ctctt  putative PPT
         ttttactatatcttt  TA-rich tract