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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacaaaagatgtaataaaaattgctgattttggtcttgctcggaagatcaattctcaaccaccatacaaagaatatgtctctacacgctggtatcgagctccagAGGTTCTGCGTCAATCATCCACATATGGTTCTGCAGTCGATATGTGGGCAATGGGTACTATCATGGCTGAATTGTTTACTCTCCTTCCTCTCTTTCCAGG

Basic information

species Vitis vinifera
transcript Vv09s0070g00320.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0070g00320.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G108829_T01 (Zea mays), 3'ss of exon 10
gttacaaaagatgtaataaaaattgctgattttggtcttgctcggaagatcaattctcaaccaccatacaaagaatatgtctctacacgctggtatcgagctccagAGGTTCTGCGTCAATCATCCACATATGGTTCTGCAGTCGATATGTGGGCAATGGGTACTATCATGGCTGAATTGTTTACTCTCCTTCCTCTCTTTCCAGG------
                                       |   | || || ||      || |       |    | ||||| | || |   | | | | |||     ||     | || |  | ||| |   |   |    | |||||||||||||||||| | || |||||||| ||||| || |||| |||||||||||| ||      
---------------------------------------gtatgaaaaataaaaggcttactatttgcttagtgttttgtcttttcatgggtggaccaa-ctcagcttgtaacctgacatttcttcacctt--gccatctcatagATATGTGGGCAATGGGTGCCATAATGGCTGAGTTGTTGACACTCCATCCTCTCTTTCCTGGAACTAG

upper sequence: Vv09s0070g00320.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G178822_T01 (Zea mays), 3'ss of exon 11
gttacaaaagatgtaataaaaattgctgattttggtcttgctcggaagatcaattctcaa--ccaccatacaaagaatatgtctctacacgctggtat-cgagctccagAGGTTCTGCGTCAATCATCCACATATGGTTCTGCAGTCGATATGTGGGCAATGGGTACTATCATGGCTGAATTGTTTACTCTCCTTCCTCTCTTTCCAGG------
                                       |   | || || ||     ||    || ||      | | | | ||||  |   | |   | | ||| |   ||  |  | || |  | ||| |   |   |    | |||||||||||||||||| | || ||||||||  |||| || |||| |||||||||||| ||      
---------------------------------------gtatgaaaaataaaactaaaaaaatactatttgcttagtgtttgtctattcatggatggaccaactcaactcgtaatctgacatttcttcacctc--gccatctcatagATATGTGGGCAATGGGTGCCATAATGGCTGAGCTGTTGACACTCCATCCTCTCTTTCCTGGAACCAG

upper sequence: Vv09s0070g00320.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ22662 (Selaginella moellendorffii), 3'ss of exon 5
gttacaaaagatgtaataaaaattgctgattttggtcttgctcggaagatcaattctcaaccaccatacaaagaatatgtctctacacgctggtatcgagctccagAGGTTCTGCGTCAATCATCCACATATGGTTCTGCAGTCGATATGTGGGCAATGGGTACTATCATGGCTGAATTGTTTACTCTCCTTCCTCTCTTTCCAGG
                                           | |   ||  || |    |       ||    |||| |  ||| | | |||| || || || |||||  | |  || || ||    ||    ||||| ||||| ||||||||||||||| |||||||||||||  | || | ||||                 
-------------------------------------------gtagcttcttttgttgttcgttgcgtaatct-tatg-cattac-ctcagGTACCGTGCCCCGGAGGTGTTACTGCAGTCGTCTCTGTACAACTCTGCGGTCGACATGTGGGCAATGGGTGCTATCATGGCTGAGCTTTTCAATCTCAGG--------------

upper sequence: Vv09s0070g00320.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ11811 (Selaginella moellendorffii), 3'ss of exon 5
gttacaaaagatgtaataaaaattgctgattttggtcttgctcggaagatcaattctcaaccaccatacaaagaatatgtctctacacgctggtatcgagctccagAGGTTCTGCGTCAATCATCCACATATGGTTCTGCAGTCGATATGTGGGCAATGGGTACTATCATGGCTGAATTGTTTACTCTCCTTCCTCTCTTTCCAGG
                                           | |   ||  || |    |       ||    |||| || ||| | | |||| || ||||| |||||  | |  || || ||    ||    ||||| ||||| ||||||||||||||| |||||||||||||  | || | ||||                 
-------------------------------------------gtagcttcttttgttgttcgttgcgtaatct-tatg-ctttac-ctcagGTACCGTGCTCCGGAGGTGTTACTGCAGTCGTCTCTGTACAACTCTGCGGTCGACATGTGGGCAATGGGTGCTATCATGGCTGAGCTTTTCAATCTCAGG--------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctcaaccaccatacaaagaatatgtctctacacgctggtatcgagctccagAGGTTCTGCGTCAATCATCCACATATGGTTCTGCAGTCGATATGTGGGCAATGGGTACTATCATGGCTGAATTGTTTACTCTCCTTCCTCTCTTTCCAGG
                  aaagaatat  TA-rich tract