Sequence
atgc intronic sequence ATGC exonic sequence...ggtttactccaggctatgctgtcataatacatgctggaactgagattagttactttatgtgaataccttgattgatggccttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 3'ss of exon 2
---ggtttactcca--ggctatgctgtcataatacatgctggaactgagattagttactttatg-tgaataccttgattgatggcc-ttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
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accaacctagtcaatttgttatgctgtctttttaaatatc----ttgatatttttcacttcaggatgaagaaactaactactggttgttatatg--ctattg-gcagAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATT
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G069198_T04 (Zea mays), 3'ss of exon 2
---ggtttactccaggctatgctgtcataatacatgctggaactgagattagttactttatgtgaataccttgattgatggccttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
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aatgatatactt-agattgctctactaacttttgtatctccagatcttatgccttcataatgatgagaaactaact-attgcctgacatatcactttg-acagAAAAACAGTTGGAAGAACTTATTCTCATACATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACT
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G00590.1 (Glycine max), 3'ss of exon 1
-ggtttactccaggctatgctgtcataatacat--gctggaactga-gattagt-tactttatgtgaataccttgattgatggccttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
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ccttcgattgtagagtacactgcagtaatacatatacttcctctgatgatgagtattgtttacttgataaccaccatttat----ttatgct-tctattttgcagAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACT
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 2
ggtttactccaggctatgctgtcataataca-tgctggaactgagattagttactttatg-tgaat---accttgattgatggcct-taaatgatt-tatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
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-------ttagtgatttgattgcaaagtatacttccgtaactcacattcattgccatagactgaagttaaccaatatccatcatatatgtatgtttgtattttgcagAGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACT
upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 3'ss of exon 1
ggtttactccaggctatgctgtcataatacatgctggaactgagattagttactttatgtgaataccttgattga--tggccttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
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-tcgttttcagagtcaacatatcagaagactaaacaaaaaacacagagaat-cttgattcaaaaaatgataatgagtttgttttgaatcatcaactttgcagAAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717537|gb|FC066890.1|FC066890EST: ATGCGCTACTCATCGAGAATCCCGAATCTGATCAGATTGTTGTGCCTGAT AGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTG
genomic: ATGCGCTACTCATCGAGAATCCCGAATCTGATCAGATTGTTGTGCCTGATgtaagtacga ... tatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagttactttatgtgaataccttgattgatggccttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
gattgat putative branch site (score: 4)
ttaaatgatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtttactccaggctatgctgtcataatacatgctggaactgagattagttactttatgtgaataccttgattgatggccttaaatgatttatcgtgcagAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATT
- - tactcca
- - - - - - -ctatgct
- - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggcc