1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagttgttaaagcaatgggttccttcctttctccacttccgttttttcataatggataaaataacttgtgaaacaacactgtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTTGCAGAAATTCTGAAGAAAGCACGAATCTATGTGCCACCTGAACCTATTA
species | Vitis vinifera |
transcript | Vv09s0070g00100.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTTEST: gi|351014560|gb|FQ437562.1|FQ437562
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
EST: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTTEST: gi|110424195|gb|EC990551.1|EC990551
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
EST: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTTEST: gi|110413992|gb|EC979812.1|EC979812
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
EST: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
cttccgttttttcataatggataaaataacttgtgaaacaacactgtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTTGCAGAAATTCTGAAGAAAGCACGAATCTATGTGCCACCTGAACCTATTA
aaataac putative branch site (score: 2)
tcattcc putative PPT
ttttttcataatggat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttgttaaagcaatgggttccttcctttctccacttccgttttttcataatggataaaataacttgtgaaacaacactgtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTTGCAGAAATTCTGAAGAAAGCACGAATCTATGTGCCACCTGAACCTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA