Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttttttttgataggctccaatagctactgggtatgttgatggtttgtcgttttgaattggaccttggaaaattattggcaaaagattttaaatatgggatcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAAAGTGGCACAATTATTCGGTTGCAACATATGAGGACTCGGAAATGGCTGC

Basic information

species Vitis vinifera
transcript Vv09s0070g00030.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110716468|gb|EE091486.1|EE091486
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
EST: gi|161713418|gb|FC063696.1|FC063696
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
EST: gi|30297407|gb|CB974201.1|CB974201
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
EST: gi|110696373|gb|EE072431.1|EE072431
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
EST: gi|161718367|gb|FC067280.1|FC067280
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
EST: gi|351030353|gb|FQ432291.1|FQ432291
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
EST: gi|351015193|gb|FQ445477.1|FQ445477
EST:     AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGG                         ATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA
genomic: AGCAGTCAGTTACAGCTTTCCCAAATGTTGATGATTCCAATAGCTACTGGgtatgttttt ... atcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattggaccttggaaaattattggcaaaagattttaaatatgggatcattccagATTGTTCGGCCTCTTCTGGGTTCATCTTCCAAACAAGGAGATAGCATTAAAAGTGGCACAATTATTCGGTTGCAACATATGAGGACTCGGAAATGGCTGC
                                              tcattcc  CT-rich tract
              aaaattattggcaaaa  TA-rich tract