Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgtcttgactttaaccagaatctacttgggtttctcatggtccatttgcttcatattgcttgaaatcttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 3
-------------------------gtttgtgtcttgactttaaccagaatctacttgggtttctcatggtc-catttgcttcatattgcttgaaatcttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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atatttataattgattactaaattagtgtttgttagactattgaacaatatgtttgttgtttttatctagtaataatgaactggcattctt----attttatagGTAAAAGATAATCCTCTTGGAGATTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTG
upper sequence: Vv09s0054g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 9
-----gtttgtgtcttg-act--ttaaccagaatctac-----ttgggtttctcatggtccattt---gcttcatattgcttgaaat------cttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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ttgttgtctatatctagtagtaatgaactagcattttcattttgtaggcgaaggataacccttttggagatttttatgaattggcattcttattttatagGTGAAGGATAATCCTTTTGGAGATTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTG
upper sequence: Vv09s0054g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 6
---------------------gtttgtgtc--ttgactttaaccagaatctacttg--ggtttctcatggtc-catttgcttcatattgcttgaaatcttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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taatttataattgactattaagttagtgttcattagattacttaagagtatgtttgttagctttacatagtagtaatgaattgacattctt----atttcaaagGTGAGAGACAACCCTTCAGGAGATTTTAAGAGTATGTATCGTCATATTACTAAAGGGTCTTGGACATTCTCAGATCAAGACCATGGATGGCAAGTTTCTG
upper sequence: Vv09s0054g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G27660.1 (Glycine max), 3'ss of exon 2
----------------------gtttgtgtcttgactttaaccagaatctacttgg---gtttctcatggtc-catttgcttcatattgcttgaaatcttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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tttaaattggacgacgaatttagtgttcattagattattgattaatatgtaatttgctagctttacatagcagtaatgaactaacactctt----atttcacagGTGAAGGATGACCCTTTAGGAGATTTTAAGAGTATGTATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGATCAGGGATGGCAAGTTTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatctacttgggtttctcatggtccatttgcttcatattgcttgaaatcttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
ttcatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtgtcttgactttaaccagaatctacttgggtttctcatggtccatttgcttcatattgcttgaaatcttgaagGTCAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA