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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgattttttatggaaacaatttctttttcgtatgaatatgctacgcgtgcatgaaacacattcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT

Basic information

species Vitis vinifera
transcript Vv09s0054g01280.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
gtaagttttgattttttatggaaacaatttctttttcgtatgaatatgctacgcgtgcatgaaacacat-tcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT
|| |      || ||| ||  |    | |   | |  |||   ||    |     || |    |||  | || |   | |  ||| ||||| ||||| || || || |||||  |  ||||||||||||| |||||||||||  |||||| ||| ||||| || |||||||||||||| ||||||||||
gtgaaagac-atctttaattaatcagaatgtgtgtatgtacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
gtaagttttgattttttatggaaacaatttct-ttttcgtatgaatatgctac-gcgtgcatgaaacacattcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT
|| |        |||   |    ||||| | | | | |  ||   | |  | |   |   |||| |  | ||||  || ||  ||  ||||| ||||| ||||| ||||||||  | |||||||| ||||| |||||||||||  ||||||  || || ||  | |||||||||||||| ||||||||||
gtgaaagacatatttaattaatcacaatgtgtgtgtgcacatatcttttttgctatgaaaatgatagtcgttcattat-gtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT

upper sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 7
----------gtaagttttgattttttatgga--aacaatttctttttcgtatgaatatgctacg-cgtgcatgaaacacattcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT
           |  |  |  |||||||||  |  || | |  | | |   | | | | |  || |      |||| |   |||||   || |   || ||||| ||||| ||||| |||||||     |||||||||||| | |||||||||||| |  |||  ||||||||| |||| | | ||||||| ||||||||||
ataagagtgcatttgaataaattttttattaattaaaattcacatatatatgtaatttttttatgataaaaatgatatttattcatt-ttatactttacagGAAGATCTTTACTATCCCCATCATTGGATACAAGATCTATTATGGGATAGTTTGTATGTATTCACCGAGCCTCTTCTAAATTGTTGGCCTTTCAACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgtatgaatatgctacgcgtgcatgaaacacattcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT
                                             tttatttc  CT-rich tract
                                  attcaaaattgtttat  TA-rich tract