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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttagttatactaaaaccatccgtccttcaaatatttcatgcttacatgagacattctgtcaaattttctattgcaggagaatctctactattcccgttcgttaatatagGATTTGATGTGGGATGGTATATACATATTTACCGAGCCTTTTCTGACTCATTGGCCCTTCAACAAGTTGAGGGAAAAGGCTCTTGAAACAACAATGAAAC

Basic information

species Vitis vinifera
transcript Vv09s0054g01140.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 6
------gtaagttttagttatactaaaaccatccgtccttcaaatatttcatgcttacatgagacattctgtcaaattttctattgcaggagaatctctactattcccgttcgttaatatagGATTTGATGTGGGATGGTATATACATATTTACCGAGCCTTTTCTGACTCATTGGCCCTTCAACAAGTTGAGGGAAAAGGCTCTTGAAACAACAATGAAAC
      |  |  |||| |||  |  ||    |   |  | || ||  ||  |   |  |   |||| |     |   | || ||| |||||  |||| || ||| | | | | ||  || | ||| | || |||||| || ||||||||||||| ||||| || || |||| |||||| ||||||||||                                 
gtgaaagacatctttaattaatcagaatgtgtgtatg-tacatatcctttttctatgaaaatgacagttgtctattatatcaattacagGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGT---------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtcaaattttctattgcaggagaatctctactattcccgttcgttaatatagGATTTGATGTGGGATGGTATATACATATTTACCGAGCCTTTTCTGACTCATTGGCCCTTCAACAAGTTGAGGGAAAAGGCTCTTGAAACAACAATGAAAC
                                            cgttaat  putative branch site (score: 4)
      aaattttctatt  TA-rich tract