Sequence
atgc intronic sequence ATGC exonic sequence...aactagagtcagaagacattggtcattaacttctgcttccaacgaaacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 6
aactagagtcagaagaca-ttggtcat--taacttctgc-ttccaacgaaacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA
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--cttagggcatcagttacttgcttatgccagtacttgtatattgcttgtgcatgcaaattttctagcaataca-ctcattggt-ttgcaccatgctatttcagGTGGAAAATGTAATAGCCCAGCTAAATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCA
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 7
aactagagtcagaagaca-ttggtcat--taacttctgc-ttccaacgaaacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA
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--ctaagggcatcagttacttgcttatgctggtacttgtatattgcttgtgcatgcaatttttctagcaatgcactcaatggg--ttgcaccatgctttttcagGTGGAAAATGTAATAGCCCAGCTAAATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCA
upper sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------------------------------------aactagagtcagaagacattggtcattaacttctgcttccaacgaaacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA
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gtagatactaattttgagtttgtccaacagattttctttatatcctaactcg-gtgtgaaaaagtgggcaatcaatctgcattaatgctgaagaaaatattggctgctcaagattgacacgtttgct---aactcatgtctctcagGTAGAGAAGGTTATTACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTAATCCATCGTACTCTACCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA
ttctgat putative branch site (score: 3)
tttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aactagagtcagaagacattggtcattaacttctgcttccaacgaaacaagcattttctcgggaggtttaatttgctggcattgaattctgatgtttcagGTTGAGAATGTTATCATTGAGCTTAATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - agaagac
- - - - - - - - - - - -cattaac
- - - - - - - - - - - - - - - - - gcttcca
- - - - - - - - - - - - - - - - - - - - - -gaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggca