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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGTGTTTGAGACAGGTTAGATGTCAAACCATTGCATCTGGAAATGAGAAATATATG

Basic information

species Vitis vinifera
transcript Vv09s0054g00190.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 2
----gtatgcacttggactata--gttat--ttccattga-tacctttactttcatattaatattctggttctcattcctgtccactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGTGTTTGAGACAGGTTAGATGTCAAACCATTGCATCTGGAAATGAGAAATATATG
    | |  |||||    | ||  |||||  |  || ||| ||    |  |    |  |  |||  || | || ||      | | ||||     |  ||||||||||| |||||||||||||| || |||||||||||||||||| ||||||| |||                                          
gtaaggaaccacttaagttgtattgttataatgtcactgactatagatgatgatctggttgtatgttgatgctaatgtta--caaatctgttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactttcatattaatattctggttctcattcctgtccactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGTGTTTGAGACAGGTTAGATGTCAAACCATTGCATCTGGAAATGAGAAATATATG
          tattaat  putative branch site (score: 2)
                                                ctttc  putative PPT
     tttcatattaatattc  TA-rich tract