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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcgtagttttgtctcatgtatttggttttctgttttactcatgaagatgtgggtagctttaactaatagatgacacatttttcatgcagCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGG

Basic information

species Vitis vinifera
transcript Vv09s0054g00090.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
---gtactcgtagttttgtc-tcatgtatttg--gttttctgttttactcatgaagatgtgggtagctt-taactaatagatgacacatttttcatgcagCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGG
       || | ||   | | | |||||  ||  ||||    || | |||     |   ||  |  ||| | | || |     |  | | | |  | ||| ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||||||||
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttctctcccggcactgaatgccttcttaatattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactcatgaagatgtgggtagctttaactaatagatgacacatttttcatgcagCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGG
                          aactaat  putative branch site (score: 2)
                                         catttttc  putative PPT
                       tttaactaatagat  TA-rich tract