Sequence
atgc intronic sequence ATGC exonic sequence...ataccagtattttctactttcatggtttgagtgtgtgcatatgttgattattggcttgattcatcctcgatgttaaatgatctgcaatttgtatctacagCACATCAAAAGAGATATCAGATTTAGAGGGAGAGCTTTTATCCATCAGAAACCTGCTATCTACTCAGTCAGGCTTAATTCATGGTTTAGCTGAAGGAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G23840.1 (Glycine max), 3'ss of exon 3
--ataccagtattttctactttcatg-gtttgagt--gtgtgcatatgttgat-tattggcttgattcatcctcgatgttaaatgatctgcaatttgtatctacagCACATCAAAAGAGATATCAGATTTAGAGGGAGAGCTTTTATCCATCAGAAACCTGCTATCTACTCAGTCAGGCTTAATTCATGGTTTAGCTGAAGGAGTG
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gaccttaaataatagctgctgcaatatgttttagctaatgttagttagctgatatattg--ttggtcatattttgaatctaagcaatatttaaacg----ttacagAACATCTAAGGAGATATCTGATTTAGAGGGGGAGCTTTCATCTATTAGAAACCTGCTCTCTACACAAGCTGCCTTGATACATGGTTTGGCTGAAGGAGTT
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G00570.2 (Glycine max), 3'ss of exon 4
--ataccagtattttctactttcatg-gtttgagt--gtgtgcatatgttgattattggcttgattcatcctcgatgttaaatgatctgcaatttgtatctacagCACATCAAAAGAGATATCAGATTTAGAGGGAGAGCTTTTATCCATCAGAAACCTGCTATCTACTCAGTCAGGCTTAATTCATGGTTTAGCTGAAGGAGTG
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gaccttaaaaaatagctgctgcaatgtgttttagctaatttttgttagctgatatattgttggccatattttgaat-ctaagcaatatttaaatggta----cagAACATCTAAGGAGATATCAGATTTAGAGGGGGAGCTTTCATCTATTAGAAACCTGCTCTCCACACAAGCTGCCTTGATACATGGTTTGGCTGAAGGAGTT
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G49830.1 (Arabidopsis thaliana), 3'ss of exon 2
-ataccagtattttctactttcatggtttgagtgtgtgcatat-gttgattattggct-tgattcatcctcgatgttaaatgatctgcaatttgtatctacagCACATCAAAAGAGATATCAGATTTAGAGGGAGAGCTTTTATCCATCAGAAACCTGCTATCTACTCAGTCAGGCTTAATTCATGGTTTAGCTGAAGGAGTG
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tttgcgttttgcatatgacttctttttcctcgcactaccttattgttttttcttggcggtgtgttattttgaaaattaaacttttttctgttc---tgtgcagCACATCTAAAGAGATATCAGATCTTGAGGGGGAGCTATCATCTATCAGAAATCTTCTCTCCACTCAGGCGACTCTAATCCATGGCTTAGCAGATGGAGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattattggcttgattcatcctcgatgttaaatgatctgcaatttgtatctacagCACATCAAAAGAGATATCAGATTTAGAGGGAGAGCTTTTATCCATCAGAAACCTGCTATCTACTCAGTCAGGCTTAATTCATGGTTTAGCTGAAGGAGTG
atgttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataccagtattttctactttcatggtttgagtgtgtgcatatgttgattattggcttgattcatcctcgatgttaaatgatctgcaatttgtatctacagCACATCAAAAGAGATATCAGATTTAGAGGGAGAGCTTTTATCCATCAGAAACCTGCTATCTACTCAGTCAGGCTTAATTCATGGTTTAGCTGAAGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - ttcatgg
- - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaat