Sequence
atgc intronic sequence ATGC exonic sequence...tagggtgtctgaatctctgataaccatggtttctcactttgaatttgctgaatttgcttagcttctttgaggatttaaattcttttttccttgtttgcagCGGATATTGTGTTTGATTACCGACAAAAAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g56320.1 (Oryza sativa), 3'ss of exon 1
--------------------------------------------------------------tagggtgtctgaatctctgata----accatggtttctcactttga-atttgctgaatttgcttagctt----ctttgaggatttaaattcttttttcct-tgtttgcagCGGATATTGTGTTTGATTACCGACAAAAAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGCAA
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gtacgcgctccagcacttggatgccccgttcgatccaaataccatcttataataaaatgtcctgaattgtttggttcctgaacatgagattctgtatactaacttcagcagtagacgatctttccttggttacagctctatatatatagttacttgtgaaatgtgtttgcagCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTACCTGCAAGGAGATTATTACATCGCACCCCTCTTCCTT----
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G44940.1 (Glycine max), 3'ss of exon 1
-----tagggtgtctgaatctctgataaccatggtttctcactttgaatttgctgaatttgcttagcttctttgaggatttaaattcttttttccttgtttgcagCGGATATTGTGTTTGATTACCGACAAAAAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGCAA
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gtaattctaatgcc--attcctttattctcacg-ctccacatttttttccatcaataacaatcaaacatcacctcccccttttgttttttgttttgtgtt-gcagCGGACATTGTCTTTGATTATCGTCAAAAAGTGACGAGGTCCTTTCAATACCTTCAGGGCGATTATTACATCGCTCCTCTCTTCATG----
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G73110.1 (Arabidopsis thaliana), 3'ss of exon 1
-tagggtgtctgaatctctgataaccatggtttctcactttgaattt--gctgaatttgcttagcttctttgaggatttaa----attcttttttccttg----tttgcagCGGATATTGTGTTTGATTACCGACAAAAAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGCAA
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gttaagtctctttttcttctttttgaaaaatcctatattttggaatttggataagtacaatgactctgattgtggagttgacagaacttgtgtatatctgtgaatttgcagCTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTG---- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctgaatttgcttagcttctttgaggatttaaattcttttttccttgtttgcagCGGATATTGTGTTTGATTACCGACAAAAAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGCAA
ttcttttttccttgtt CT-rich tract
atttaaattctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagggtgtctgaatctctgataaccatggtttctcactttgaatttgctgaatttgcttagcttctttgaggatttaaattcttttttccttgtttgcagCGGATATTGTGTTTGATTACCGACAAAAAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGCAA
- - -tgtctga
- - - - - - - - - - - -ccatggt
- - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttag