1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaagagttgtgggtttagcgtatgaatagtttaggaattttgttctggtgctcacaacccatgtttggaatcatttggatggagcattttgtttttgcagGAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATGTGGTTTGCCCATAAGCACTTATTTCAGCGCATTGAAGCTTCTCTGGTTG
species | Vitis vinifera |
transcript | Vv09s0002g07860.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTACCACGCCATTGTTTGGATGGATGCTAGAACCAGTTCTATTTGCAG GAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATGEST: gi|71871261|gb|DT020316.1|DT020316
genomic: CTCTACCACGCCATTGTTTGGATGGATGCTAGAACCAGTTCTATTTGCAGgtttttattt ... gtttttgcagGAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATG
EST: CTCTACCACGCCATTGTTTGGATGGATGCTAGAACCAGTTCTATTTGCAG GAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATG
genomic: CTCTACCACGCCATTGTTTGGATGGATGCTAGAACCAGTTCTATTTGCAGgtttttattt ... gtttttgcagGAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATG
tggtgctcacaacccatgtttggaatcatttggatggagcattttgtttttgcagGAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATGTGGTTTGCCCATAAGCACTTATTTCAGCGCATTGAAGCTTCTCTGGTTG
tgctcac putative branch site (score: 2)
ttttgttttt putative PPT
attttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagagttgtgggtttagcgtatgaatagtttaggaattttgttctggtgctcacaacccatgtttggaatcatttggatggagcattttgtttttgcagGAAATTGGAGAAAGAATTACCTGGGGGAAGAACACATTTTGTGGAGACATGTGGTTTGCCCATAAGCACTTATTTCAGCGCATTGAAGCTTCTCTGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
aaagagt
- - - - gtgggtt
- - - - - - - - -gcgtatg
- - - - - - - - - - - - - - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgg