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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgatgatacatattttttttaaatctaaaaaaaaaaaaggaaaagaaaattatcattctccacatttcgctaaaattaatatgtgattaatgtgtttctctctgaagGGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAG

Basic information

species Vitis vinifera
transcript Vv09s0002g07530.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G03250.1 (Glycine max), 3'ss of exon 2
gtaatttgatgatacatattttttttaaatctaaaaaaaaaaaaggaaaagaaaattatcattctccacatttcgctaaaattaa-tatgtgattaatgtgtttctctctgaagGGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAG
            ||||||||||  ||||   |    |||||    | |        | |||||        || | ||  | ||| ||| ||  | |||   || | ||  ||||| ||||| |||||||| ||||||||||| | ||| ||  | ||||| || ||||| ||||| ||| |||| |||||||||||||||||||||
-----------gtacatattttacttaacattctccaaaaatgttgca--------tgtcattt---gtggtttgatatcactaactatttgtgtgatgaaatttt-tccaaagGGTATCTCTACTGATAAGATACTTGATGTAAGAAAACTATTGGCTGTGAAGGTGGAGACATGCCATTTCACAAACTATTCTTTATCTCATGAG

upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 2
gtaatttgatgatacatattttttttaaatctaaaaaaaaaaaaggaaaagaaaattatcattctccacatttcgctaaaattaatatgtgattaatgtgtttctctctgaagGGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAG
            ||||||| || ||| |   |    ||||     | |    |  || |  ||    |  | |  |||   ||  | |||||| ||      | | ||  ||||||||||| |||||||| ||||||||||| | ||| ||  | ||||| || ||||| ||||| ||| | || || ||||||||||||||||||
-----------gtacatatcttatttcacattctccaaaattgttgcatgtcattttgtggtttg--atgtctaacta---tt--tgtgtgatgaaa-----tttttccaaagGGCATCTCTACTGATAAGATACTTGATGTAAGAAAACTATTGGCTGTGAAGGTGGAGACATGCCATTTTACAAATTATTCTTTATCTCATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattctccacatttcgctaaaattaatatgtgattaatgtgtttctctctgaagGGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAG
                                gattaat  putative branch site (score: 3)
                                        tgtttctctct  CT-rich tract
                  taaaattaatatgtga  TA-rich tract