1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attcaaaattcttatattgaaatgtactgcacattttgtttagtattaatttctttacatattggattatggcattcttatctgtgtgtaaacatatcagGTTCTGGAAAAACGACAACATGTACAAAGTATGCATATTATCATCAAAAGAAGGGTTGGAAACCAGCTTTAGTGTGTGCCGATACATTTAGAGCTGGTGC
species | Vitis vinifera |
transcript | Vv09s0002g07290.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTCCAAAGAAAGGGAAAACAAGCGTTGTCATGTTTGTTGGTTTACAAG GTTCTGGAAAAACAACAACATGTACAAAGTATGCATATTATCATCAAAAGAEST: gi|28964598|gb|CB343631.1|CB343631
genomic: CACTCCAAAGAAAGGGAAAACAAGCGTTGTCATGTTTGTTGGTTTACAAGgtaaatggtg ... aacatatcagGTTCTGGAAAAACGACAACATGTACAAAGTATGCATATTATCATCAAAAGA
EST: CACTCCAAAGAAAGGGAAAACAAGCGTTGTCATGTTTGTTGGTTTACAAG GTTCTGGAAAAACAACAACATGTACAAAGTATGCATATTATCATCAAAAGAEST: gi|161709514|gb|FC059741.1|FC059741
genomic: CACTCCAAAGAAAGGGAAAACAAGCGTTGTCATGTTTGTTGGTTTACAAGgtaaatggtg ... aacatatcagGTTCTGGAAAAACGACAACATGTACAAAGTATGCATATTATCATCAAAAGA
EST: TTGTTGG-TTACAAG GTTCTGGAAAAACAACAACATGTACAAAGTATGCATATTATCATCAAAAGA
genomic: TTGTTGGTTTACAAGgtaaatggtg ... aacatatcagGTTCTGGAAAAACGACAACATGTACAAAGTATGCATATTATCATCAAAAGA
ttaatttctttacatattggattatggcattcttatctgtgtgtaaacatatcagGTTCTGGAAAAACGACAACATGTACAAAGTATGCATATTATCATCAAAAGAAGGGTTGGAAACCAGCTTTAGTGTGTGCCGATACATTTAGAGCTGGTGC
tattaat putative branch site (score: 2)
tttacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaaaattcttatattgaaatgtactgcacattttgtttagtattaatttctttacatattggattatggcattcttatctgtgtgtaaacatatcagGTTCTGGAAAAACGACAACATGTACAAAGTATGCATATTATCATCAAAAGAAGGGTTGGAAACCAGCTTTAGTGTGTGCCGATACATTTAGAGCTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- tcaaaat
- - - - - - - - - - - - - ctgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt