1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaaactccatagtgagcagttttataaaagcagcgtccaactgttagtatagttgtatatctagttgatatcctcatgctttttttgatggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGACAAGCCAACTCACTCCAAATGCATATGAA
species | Vitis vinifera |
transcript | Vv09s0002g06120.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAAT CTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGAEST: gi|30303221|gb|CB980015.1|CB980015
genomic: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAATgtaagtgctc ... ggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGA
EST: ATCACAGAAGGCAATAATTTTGTGTTGTGGTTCATCGTCAGAAGCTGAAT CTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGAEST: gi|110700778|gb|EE077729.1|EE077729
genomic: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAATgtaagtgctc ... ggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGA
EST: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAAT CTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGAEST: gi|110693215|gb|EE069249.1|EE069249
genomic: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAATgtaagtgctc ... ggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGA
EST: ATCACAGAAGGCAATAATTTTGTGTTGTGGTTCATCGTCAGAAGCTGAAT CTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGAEST: gi|294964388|gb|GW838191.1|GW838191
genomic: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAATgtaagtgctc ... ggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGA
EST: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAAT CTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGA
genomic: ATCACAGAAGGCAATAATTTTGTGTCGTGGTTCATCGTCAGAAGCTGAATgtaagtgctc ... ggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGA
tagtatagttgtatatctagttgatatcctcatgctttttttgatggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGACAAGCCAACTCACTCCAAATGCATATGAA
ttttgat putative branch site (score: 4)
tttttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaactccatagtgagcagttttataaaagcagcgtccaactgttagtatagttgtatatctagttgatatcctcatgctttttttgatggacttgcagCTGCTGTTAATTTAGAAGATGGTTCTGAAGAAACAAAATCTTCAGGTTTGACAAGCCAACTCACTCCAAATGCATATGAA
- -aactcca
- - - - - - - - - - - - - aaaagca
- - - - - - - - - - - - - - - - - - tccaact