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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttcccattttgaaactaaaaaaaaagaaaaaaaaaagaagaatattgtacatcatgatcaatcaaagttcttttttttttttttctccaattttgacttgtttttgttccaatctatgctagGATATTGGCTCCAACTACTTACATATTCTTTGCTTCAGCCCTTCCTGTTATAGCCTTTGGTGAGCAATTGAGTAGAGATACAG

Basic information

species Vitis vinifera
transcript Vv09s0002g05810.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G374989_T01 (Zea mays), 3'ss of exon 4
gtattttcccattttgaaactaaaaaaaaagaaaaaaaaaagaagaatattgtacat-catgatcaatcaaagttcttttttttttttttctccaattttgacttgtttttgttccaatctat-gctagGATATTGGCTCCAACTACTTACATATTCTTTGCTTCAGCCCTTCCTGTTATAGCCTTTGGTGAGCAATTGAGTAGAGATACAG
                                      | |  |  || |||||  | | |||    |||    || ||  ||  ||   ||    | || ||| ||  |   |  | ||| | |  |||||| |||| || ||    |||||||||||||| ||  |  | ||||||||||||||||| ||||||||||| | ||||||||
--------------------------------gtttgcacaacaccatgttgtaattgcttgacatgtca----tcattacttaattagcctgttgtgttcact-gtgctacatgaattctgttgtcagGATACTGGCACCTACGCTCTACATATTCTTTGCATCTACAGTCCCTGTTATAGCCTTTGGGGAGCAATTGAGCAAAGATACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttttttttttttctccaattttgacttgtttttgttccaatctatgctagGATATTGGCTCCAACTACTTACATATTCTTTGCTTCAGCCCTTCCTGTTATAGCCTTTGGTGAGCAATTGAGTAGAGATACAG
                       ttttgac  putative branch site (score: 3)
     ttttttttttttctcc  TA-rich tract