Sequence
atgc intronic sequence ATGC exonic sequence...aattttgttgtttaaagtttacttttgtgctctttgatttagaatgaaaataccatgttgtgagatgataccatgaattaaatcttctgtttttgagcagGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g11820.1 (Oryza sativa), 3'ss of exon 2
aattttgttgtttaaagtttacttttgtgctctttg-atttagaatgaaaataccatgttgtgagatgatacca-tgaattaaatcttctgtttttgagcagGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACA
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-gtagacttaattagtgggtatttgtgtaatactgatgtgcattactttgtttcctaattttttttgtatattactgaatcacatatattgatattaa-cagGGACCACAATATGTCTGTACAAATTTCTGGACCTTCATTTGTACCAATTGCAGTGGAGCACA
upper sequence: Vv09s0002g04860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G043056_T01 (Zea mays), 3'ss of exon 2
aattttgttgtttaaagtttacttttgtgctctttgatttagaatgaaaataccatgttgtgagatg-ataccatgaattaaatcttctgtttttgagcagGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACA
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acatatcttgctaatatgttacaagagtaatattttgttagtgcctcctctactgttccacctgaaggaaaaaataacactgatatgctgattt-gaacagGGACCACAATATGTCTGCACAAATTTCTGGACCTTTGTTTGTACCAATTGCAGTGGATCACA
upper sequence: Vv09s0002g04860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G341732_T02 (Zea mays), 3'ss of exon 3
aattttgttgtttaaagtttacttttgtgctctttgatttagaatgaaaataccatgttgtgagatgataccatgaat-taaatcttctgtttttgagcagGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACA
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tatcttgctaatatattatgagaataatgttttgttattgccttccctactgttccacctgaagaaaaaagcaagaacactgatatgctgattt-gaacagGGACCACAATATGCCTGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaaataccatgttgtgagatgataccatgaattaaatcttctgtttttgagcagGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACA
tcttctgttttt CT-rich tract
atgaattaaatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattttgttgtttaaagtttacttttgtgctctttgatttagaatgaaaataccatgttgtgagatgataccatgaattaaatcttctgtttttgagcagGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - -aaatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgaa