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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaatcagcctatggtacttagtttaagattttagctggaggggggccctatggtttaatgtttattccgtgttgtgttatacctaacggaaatgtacattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACA

Basic information

species Vitis vinifera
transcript Vv09s0002g04680.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035450|gb|FQ463295.1|FQ463295
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351033537|gb|FQ447696.1|FQ447696
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|349825219|gb|FQ417940.1|FQ417940
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351026704|gb|FQ436357.1|FQ436357
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGCCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351056576|gb|FQ442404.1|FQ442404
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351021829|gb|FQ437214.1|FQ437214
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGCGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351015172|gb|FQ445456.1|FQ445456
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|30295926|gb|CB972720.1|CB972720
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAA
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAA
EST: gi|351016149|gb|FQ435469.1|FQ435469
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351014027|gb|FQ434179.1|FQ434179
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|349830554|gb|FQ416852.1|FQ416852
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351022620|gb|FQ447142.1|FQ447142
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351045993|gb|FQ441376.1|FQ441376
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|30295860|gb|CB972654.1|CB972654
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351031000|gb|FQ439036.1|FQ439036
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351026139|gb|FQ428151.1|FQ428151
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACT                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|27579965|gb|CB002660.1|CB002660
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351026310|gb|FQ428322.1|FQ428322
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|349832595|gb|FQ421953.1|FQ421953
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351044463|gb|FQ442994.1|FQ442994
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351016635|gb|FQ424062.1|FQ424062
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|71856214|gb|DT005269.1|DT005269
EST:     AAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: AAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
EST: gi|351027160|gb|FQ440024.1|FQ440024
EST:     ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACG                         ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG
genomic: ATGCTGATGCAAGTGAAATACAGGGTCAGGTGAAGATCAGCACATATACGgtgcgtaatc ... acattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttaatgtttattccgtgttgtgttatacctaacggaaatgtacattggcagATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACA
                              acctaac  putative branch site (score: 2)
     taatgtttatt  TA-rich tract