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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA

Basic information

species Vitis vinifera
transcript Vv09s0002g04440.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g56990.1 (Oryza sativa), 3'ss of exon 2
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgttttttt-acatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
     | |    || |  ||||      | |   |   | | ||  |  | |  | | | ||| |||| |   ||        || | |  ||    |  ||| ||||     |||| ||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||| ||  |    ||||||||||| |||||||||||
----tctcttgctgttttcattgatgaagtttgata--gaatctgctcagctcctctgatatgtagttctgacta------ctttgattctttctcgaaatttgaaaca----cagACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACCACTGGAACTGGGAGGATGAGGTACCTTCGCCACGTGCCCAAGAGGTTCAAGAGTAACTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g02130.1 (Oryza sativa), 3'ss of exon 2
gtgagcgcgctttgatcaca-ttagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
           ||| |     ||||||||    ||||| ||     || |||  ||  |  |    || ||||| |  ||| ||||  |   ||| | | |   |    |||||||| |||||||| |||||||| ||  || | ||||| || |||||||| |||||||||||| | || |||||  || | |||||||||||||||||||||||
---------tattgtttgtggttagcctttaaatctctagt-tagattctgtggttgaatttc---tttttttttggatttgcttagtt---ttaatttctgcgatgtcatttcagACAACTGGAGCGTGAAGGCCATTAGGCGCAAGACCACAGGAACTGGAAGGATGAGGTACATGCGACATGTGCCTAGGAGGTTCAAGAGCAACTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g03450.1 (Oryza sativa), 3'ss of exon 2
gtgagcgcgctttgatcaca-ttagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
            || |     |||||||     ||||| ||     || |||  ||  |  |    |   |||| |  ||| ||||  |   ||| | | |   |    |||||||| |||||||| |||||||| ||  || | ||||| || ||||| || |||||||||||| | || |||||  || | |||||||||||||||||||||||
------------tgtttgtggttagcctctaaatctctagt-tagattctgtggttgaatttcttttgtctttttggatttgcttagtt---ttaatttctgcgatgtcatttcagACAACTGGAGCGTGAAGGCCATTAGGCGCAAGACCACAGGAACCGGAAGGATGAGGTACATGCGACATGTGCCTAGGAGGTTCAAGAGCAACTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G077991_T02 (Zea mays), 3'ss of exon 2
gtgagcgcgctttgatcacattagccttgctctctc-ttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
              |||  |  | ||| | | |    || ||    ||   |  ||  || |    || |     || |   || ||       ||  || |  |  |  ||||||||||||||||||||||||| ||| || | |||||||| || || || |||||||||||| | ||||| ||  || |  | ||||||||||||||||||||
------------aaatctga--aacctagttttaggattatatgccttgcttgattcaacttcatattctaacctgaatgaactcaatgttaacatagtggtcca--ctgtttcagATAACTGGAGTGTGAAGGCCATCAGGCGCAAGACAACCGGTACCGGAAGGATGAGGTACATGCGCCACGTGCCTCGCCGTTTCAAGAGCAACTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G168674_T02 (Zea mays), 3'ss of exon 1
-gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
  ||       | |||||| |  | ||||| ||  |     | ||| | ||| ||  | ||   |       | || |   | |||||      ||| || |  |  | ||||||||||| |||||||||||||| ||| || | ||||| ||||| || || |||||||||||| | || || ||  || |  | ||||||||||||||||||||
attggaaatcttgtgatcata--acccttgttcgattc---aacttatatgtcttgctcca---aacctggatgagttcaatgttaac------attgtggtcca--caatttcagATAATTGGAGTGTGAAGGCCATCAGGCGCAAGACCACTGGTACGGGAAGGATGAGGTACATGCGACACGTGCCTCGCCGTTTCAAGAGCAACTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S152_133V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacg-atttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
             |     |    |     |    |    | |||  ||     |   |||  | | || |||   | |    ||    |   ||     |  |||     ||||||||||||||| |||||||| ||  |||| |||||||||||||| ||  | ||| |  ||||||||||| || |  | ||||||   | ||| ||||||||
-------------ggatggagggtctcatgttgagccgacatcttccttagcactggtcatacaatggtattt---tctcgtatattacacacatctgactccaaagatgcttcagATAACTGGAGCGTGAAGGCTATTAGGAGAAAGACAACTGGAACGGGACGCATGCGTCACCTTCGCCATCTTCCCCGCAGGTTCTCTAACAATTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S222_87V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
    |     || | |   |   | |    ||| |||    |  | | |||| |     ||     |||   |   || ||  |||| || ||          | |    | ||||||||||||| |||||||| ||  |||||||||| |||||||| ||  | ||| |  | ||||||||| || |  | || |||   | ||| ||||||||
----ggatttttgggtttgacgcgtcagaatctttctgtagcactctctgttctaca--ataagcctgtccctt--ttctttgtaaccaaatt-------cagagaatgctgcagATAACTGGAGCGTGAAGGCTATTAGGAGGAAGACCACTGGAACGGGACGCATGCGTCATCTTCGCCATCTTCCCCGCAGATTCTCTAACAATTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S3_512V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttac--atggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
           || |     |  | |  | ||   | | |    | ||||   |   ||  | ||||   || | || ||| ||||   |      || |||            |||| ||||||||||||||||| ||| |||||||||| || || |||||  | ||| |  || | || ||| || |  |  |||||   | ||| ||||||||
-------tagatttactttctaggacaagttcgaacatatgttctgtttgcaatgaaaccaacggagggtttatgagttttctcttggtttgggcgttgtgtac----------cagACAACTGGAGTGTGAAGGCTATCAGGAGGAAGACCACGGGGACTGGACGTATGCGCCACTTGCGTCATCTTCCCCGCCGGTTCTCCAACAATTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ06862 (Selaginella moellendorffii), 3'ss of exon 1
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
                                    |   |    || |  |   ||       || | |    ||  |      || || |    |  | |    ||  |  |||||||||||| | ||||||||||||| | ||||| |||||||| ||  ||||||||||||| |||||| |  |  |  | ||||||||||||||||||||
-----------------------------------gtgagaagagttcttctcccttgttcttggtggatccgcgagctc-----acgaaatctcgaaatctc--tcgtgtgtagATAACTGGAGCGAGAAGGCGATCCGGCGCAAGACCACTGGAACCGGGCGGATGAGGTACCTGCGCCATCTCCCCAGGCGATTCAAGAGCAACTTCAGAGA

upper sequence: Vv09s0002g04440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ34847 (Selaginella moellendorffii), 3'ss of exon 1
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttc-ttaactaatttattatgttttaaacgatttc------agATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
                                                            ||  |    || |   || |   |   | |  | |  |  | |  ||   | ||      |||||||||||| | ||||||||||||| | ||||| |||||||| ||  ||||||||||||| |||||| |  |  |  | ||||||||||||||||||||
-----------------------------------------------------------gtgaggagacttctcccttgtggatccgcgagctcacgaaatctcgaaatctctcgtgtgtagATAACTGGAGCGAGAAGGCGATCCGGCGCAAGACCACTGGAACCGGGCGGATGAGGTACCTGCGCCATCTCCCCAGGCGATTCAAGAGCAACTTCAGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188773|gb|CF608122.1|CF608122
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|34544037|gb|CF512269.1|CF512269
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110424137|gb|EC990493.1|EC990493
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110373985|gb|EC938433.1|EC938433
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110410703|gb|EC976395.1|EC976395
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110382670|gb|EC946987.1|EC946987
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|34415925|gb|CF414679.1|CF414679
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|30125921|gb|CB911260.1|CB911260
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110396794|gb|EC962494.1|EC962494
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110381741|gb|EC935268.1|EC935268
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|37185298|gb|CF604651.1|CF604651
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110732316|gb|EE107506.1|EE107506
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110695710|gb|EE074039.1|EE074039
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|77584031|gb|DV221055.1|DV221055
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110385508|gb|EC950041.1|EC950041
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110397211|gb|EC962939.1|EC962939
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110361431|gb|EC924900.1|EC924900
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110402336|gb|EC959896.1|EC959896
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|34415160|gb|CF413914.1|CF413914
EST:     GCGGTTTTCCCGCACCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110696153|gb|EE074986.1|EE074986
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110379200|gb|EC944380.1|EC944380
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110414332|gb|EC980159.1|EC980159
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110364894|gb|EC928477.1|EC928477
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|71866033|gb|DT015088.1|DT015088
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|33111299|gb|CF074643.1|CF074643
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110408120|gb|EC973743.1|EC973743
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110382978|gb|EC947312.1|EC947312
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110696278|gb|EE075255.1|EE075255
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110414766|gb|EC980619.1|EC980619
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110411896|gb|EC977625.1|EC977625
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110398343|gb|EC964638.1|EC964638
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110407837|gb|EC973454.1|EC973454
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110697212|gb|EE074002.1|EE074002
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110365712|gb|EC929107.1|EC929107
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110389824|gb|EC954694.1|EC954694
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110707329|gb|EE083636.1|EE083636
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
EST: gi|110427472|gb|EC993910.1|EC993910
EST:     GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAAT                         ATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA
genomic: GAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATgtgagcgcgc ... acgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA
                        aactaat  putative branch site (score: 2)
        tttttagatttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcgcgctttgatcacattagccttgctctctcttgtaccttttttgtttttttacatggagttgtttttagatttttcttaactaatttattatgttttaaacgatttcagATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA